RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 TMEM9Q9P0T7 183 aa13.06□□□□□ -0.32
CLSTN3-205ENST00000535452 PDP2Q9P2J9 529 aa13.06□□□□□ -0.32
CLSTN3-205ENST00000535452 KCND3Q9UK17 655 aa13.06□□□□□ -0.32
CLSTN3-205ENST00000535452 GCN1Q92616 2671 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-205ENST00000535452 ANKRD34CP0C6C1 535 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 PIRTP0C851 137 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 RALBP11234 206 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 TYRP1P17643 537 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 AKT1P31749 480 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 SPAM1P38567 509 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 SEPHS1P49903 392 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 MAP7Q14244 749 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 KRT33BQ14525 404 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 PRPSAP1Q14558 356 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 SPA17Q15506 151 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 LONRF2Q1L5Z9 754 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 LDLRAP1Q5SW96 308 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 KAZNQ674X7 775 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 ZNF449Q6P9G9 518 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 C6orf15Q6UXA7 325 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 GLT6D1Q7Z4J2 308 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 ARHGAP22Q7Z5H3 698 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 TMC3Q7Z5M5 1100 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 AMZ2Q86W34 360 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 PLD5Q8N7P1 536 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 LRRN4Q8WUT4 740 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 STARD8Q92502 1023 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 VPS35Q96QK1 796 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 SMIM14Q96QK8 99 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 TBC1D10AQ9BXI6 508 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 SLC12A9Q9BXP2 914 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 PACSIN1Q9BY11 444 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 TRIM4Q9C037 500 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 NHEJ1Q9H9Q4 299 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 GLOD4Q9HC38 313 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 ARFGAP3Q9NP61 516 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 NFKBIL1Q9UBC1 381 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 LNPEPQ9UIQ6 1025 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 ANAPC2Q9UJX6 822 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 PILRAQ9UKJ1 303 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 INTUQ9ULD6 942 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 G3BP2Q9UN86 482 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 KCTD3Q9Y597 815 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 LOC400499M0QZD8 3231 aa13.05□□□□□ -0.32
CLSTN3-205ENST00000535452 KLHL33A6NCF5 533 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 MKRN2OSH3BPM6 223 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 ARHGAP6O43182 974 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 SUV39H1O43463 412 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 PSTPIP1O43586 416 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 ZNF189O75820 626 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 MSH3P20585 1137 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 HMGCLP35914 325 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 DLSTP36957 453 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 CDC20Q12834 499 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 SLC10A2Q12908 348 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 XRCC4Q13426 336 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 TMTC4Q5T4D3 741 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 CACHD1Q5VU97 1274 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 ITPRIPL1Q6GPH6 555 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 PID1Q7Z2X4 250 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 ADGRG6Q86SQ4 1221 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 BPHLQ86WA6 291 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 PPP1R3BQ86XI6 285 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 GPR26Q8NDV2 337 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 BLOC1S5Q8TDH9 187 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 HAUS1Q96CS2 278 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 DCUN1D1Q96GG9 259 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 RBM41Q96IZ5 413 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 ZNF514Q96K75 400 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 C9orf72Q96LT7 481 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 PPP1R2P1Q96PQ5 205 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 OR6C1Q96RD1 312 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 DNAJC7Q99615 494 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 FANCEQ9HB96 536 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 CNOT6Q9ULM6 557 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 ST14Q9Y5Y6 855 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 RPS6KL1Q9Y6S9 549 aa13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 MN1Q10571 1320 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-205ENST00000535452 COL6A6A6NMZ7 2263 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 GLYATL1P3A0A0U1RQE8 302 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 MACROD2A1Z1Q3 448 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 STX7O15400 261 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 CST8O60676 142 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 KATNA1O75449 491 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 ZRANB2O95218 330 aaKnown RBP eCLIP13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 NDUFA10O95299 355 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 EPOP01588 193 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 MMP2P08253 660 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 PYGMP11217 842 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 HLA-DPA1P20036 260 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 RPL10P27635 214 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 CAPZBP47756 277 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 NAP1L1P55209 391 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 ACY1Q03154 408 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 TMEM115Q12893 351 aaPredicted RBP13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 PRKAA1Q13131 559 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 MPP3Q13368 585 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 GSE1Q14687 1217 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 DEFB109BQ30KR1 87 aa13.03□□□□□ -0.32
CLSTN3-205ENST00000535452 AGAP9Q5VTM2 703 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms