RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, human

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP4A-208	ENST00000534106	ACAN	P16112	2415 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	HIVEP3	Q5T1R4	2406 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	STAB1	Q9NY15	2570 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	IGHV5-10-1	A0A0J9YXX1	117 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106		A6NNZ2	444 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	LRRIQ3	A6PVS8	624 aa	Predicted RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106		A8MU76	341 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	LMO7DN	F2Z398	122 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	STMND1	H3BQB6	276 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	TMX2-CTNND1	H3BSU7	103 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	KPNA3	O00505	521 aa	Predicted RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	TPP1	O14773	563 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	MCF2L	O15068	1137 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	TGFB1I1	O43294	461 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SNAP91	O60641	907 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	TOX4	O94842	621 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	DDAH2	O95865	285 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ZBED1	O96006	694 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	MOCS2	O96007	188 aa	Predicted RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	CALCA	P01258	141 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ASL	P04424	464 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SRPRA	P08240	638 aa	Known RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	HK1	P19367	917 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	HNRNPA2B1	P22626	353 aa	Known RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ALDH4A1	P30038	563 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	GK	P32189	559 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	CCKBR	P32239	447 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	CHRNA3	P32297	505 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ANAPC15	P60006	121 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	IRF9	Q00978	393 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SLC6A3	Q01959	620 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ROM1	Q03395	351 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	CDC20	Q12834	499 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	CHAF1B	Q13112	559 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	EIF3I	Q13347	325 aa	Known RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ELAVL3	Q14576	367 aa	Known RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ESPL1	Q14674	2120 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	PSMD6	Q15008	389 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	E2F5	Q15329	346 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SNRNP35	Q16560	246 aa	Known RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ZNF699	Q32M78	642 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	GAGE13	Q4V321	117 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ZNF667	Q5HYK9	610 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	MS4A13	Q5J8X5	152 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	LRRC73	Q5JTD7	316 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	HECTD2	Q5U5R9	776 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	RNF219	Q5W0B1	726 aa	Predicted RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ANKS6	Q68DC2	871 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	PM20D1	Q6GTS8	502 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ESRP1	Q6NXG1	681 aa	Known RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	TADA2B	Q86TJ2	420 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	VPS36	Q86VN1	386 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	PARG	Q86W56	976 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	NELFCD	Q8IXH7	590 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	CCDC13	Q8IYE1	715 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	NRSN1	Q8IZ57	195 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	LGI2	Q8N0V4	545 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	BCL6B	Q8N143	479 aa	Predicted RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106		Q8NA96	180 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	OR2A12	Q8NGT7	310 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	RASSF8	Q8NHQ8	419 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	CCL4L1	Q8NHW4	92 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	UBA3	Q8TBC4	463 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	CLEC4C	Q8WTT0	213 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	NAT6	Q93015	286 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ART4	Q93070	314 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	MOCOS	Q96EN8	888 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	MFSD3	Q96ES6	412 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	CALML4	Q96GE6	196 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SLC45A3	Q96JT2	553 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	LURAP1	Q96LR2	239 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	MAGEB10	Q96LZ2	347 aa	Predicted RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	TAAR9	Q96RI9	348 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	CMKLR1	Q99788	373 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	MLST8	Q9BVC4	326 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SPRY4	Q9C004	299 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	GPN2	Q9H9Y4	310 aa	Predicted RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	APOBEC3G	Q9HC16	384 aa	Known RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	APMAP	Q9HDC9	416 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	PANK4	Q9NVE7	773 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SLC39A1	Q9NY26	324 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	LRIT1	Q9P2V4	623 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SPAST	Q9UBP0	616 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	APOBEC3B	Q9UH17	382 aa	Known RBP	3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ITM2B	Q9Y287	266 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ACTL7A	Q9Y615	435 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	PLXNA2	O75051	1894 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SVIL	O95425	2214 aa		3	□□□□□ -1.93
CHMP4A-208	ENST00000534106	TDRD6	O60522	2096 aa	Known RBP	2.99	□□□□□ -1.93
CHMP4A-208	ENST00000534106	FPGT	O14772	594 aa		2.99	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SLC7A4	O43246	635 aa		2.99	□□□□□ -1.93
CHMP4A-208	ENST00000534106	LRRTM2	O43300	516 aa		2.99	□□□□□ -1.93
CHMP4A-208	ENST00000534106	HNRNPR	O43390	633 aa	Known RBP	2.99	□□□□□ -1.93
CHMP4A-208	ENST00000534106	B3GALT2	O43825	422 aa		2.99	□□□□□ -1.93
CHMP4A-208	ENST00000534106	EIF5B	O60841	1220 aa	Known RBP	2.99	□□□□□ -1.93
CHMP4A-208	ENST00000534106	KATNA1	O75449	491 aa		2.99	□□□□□ -1.93
CHMP4A-208	ENST00000534106	ZNF821	O75541	412 aa	Predicted RBP	2.99	□□□□□ -1.93
CHMP4A-208	ENST00000534106	REC8	O95072	547 aa		2.99	□□□□□ -1.93
CHMP4A-208	ENST00000534106	SCAF4	O95104	1147 aa	Known RBP	2.99	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 47 ms