RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 POLR1CO15160 346 aaPredicted RBP17.55■□□□□ 0.4
PCF11-206ENST00000533018 VEGFDO43915 354 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 CDKN2BP42772 138 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 CLCNKAP51800 687 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 FOXM1Q08050 763 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 GTF2H3Q13889 308 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 BORAQ6PGQ7 559 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 ZC3H18Q86VM9 953 aaKnown RBP17.55■□□□□ 0.4
PCF11-206ENST00000533018 TRAPPC5Q8IUR0 188 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 SLC25A41Q8N5S1 370 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 P3H4Q92791 437 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 TADA1Q96BN2 335 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 TGM7Q96PF1 710 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 GPN2Q9H9Y4 310 aaPredicted RBP17.55■□□□□ 0.4
PCF11-206ENST00000533018 APMAPQ9HDC9 416 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 FBXO8Q9NRD0 319 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 KLHL8Q9P2G9 620 aaPredicted RBP17.55■□□□□ 0.4
PCF11-206ENST00000533018 NFKBIL1Q9UBC1 381 aaPredicted RBP17.55■□□□□ 0.4
PCF11-206ENST00000533018 FAM153AQ9UHL3 310 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 INTUQ9ULD6 942 aa17.55■□□□□ 0.4
PCF11-206ENST00000533018 LILRA5A6NI73 299 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 ZNF891A8MT65 544 aaPredicted RBP17.54■□□□□ 0.4
PCF11-206ENST00000533018 PPFIA2O75334 1257 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 RASSF9O75901 435 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 UBXN7O94888 489 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 PECAM1P16284 738 aaPredicted RBP17.54■□□□□ 0.4
PCF11-206ENST00000533018 VCLP18206 1134 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 XRCC1P18887 633 aaPredicted RBP17.54■□□□□ 0.4
PCF11-206ENST00000533018 NFKB1P19838 968 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 IDSP22304 550 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 MAP4P27816 1152 aaKnown RBP17.54■□□□□ 0.4
PCF11-206ENST00000533018 SLC19A1P41440 591 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 DRG2P55039 364 aaKnown RBP17.54■□□□□ 0.4
PCF11-206ENST00000533018 GFERP55789 205 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 UBE2IP63279 158 aaKnown RBP17.54■□□□□ 0.4
PCF11-206ENST00000533018 KCNC4Q03721 635 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 CLCA4Q14CN2 919 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 PRKD1Q15139 912 aaPredicted RBP17.54■□□□□ 0.4
PCF11-206ENST00000533018 SLC14A2Q15849 920 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 ATP13A5Q4VNC0 1218 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 SPOCD1Q6ZMY3 1216 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 TMEM26Q6ZUK4 368 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 PID1Q7Z2X4 250 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 CCDC50Q8IVM0 306 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 UNC5BQ8IZJ1 945 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 HAUS1Q96CS2 278 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 CXorf40BQ96DE9 158 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 TIMM29Q9BSF4 260 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 TRIM4Q9C037 500 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 STARD5Q9NSY2 213 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 ALG6Q9Y672 507 aa17.54■□□□□ 0.4
PCF11-206ENST00000533018 OR52A4PA6NMU1 304 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 CAPN5O15484 640 aaPredicted RBP17.53■□□□□ 0.4
PCF11-206ENST00000533018 MTSS1O43312 755 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 PSTPIP1O43586 416 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 STK17BO94768 372 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 PRKAR1AP10644 381 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 MAGEA1P43355 309 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 SEPHS1P49903 392 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 WNT3AP56704 352 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 TMEM115Q12893 351 aaPredicted RBP17.53■□□□□ 0.4
PCF11-206ENST00000533018 NOMO1Q15155 1222 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 KHDC1Q4VXA5 237 aaKnown RBP17.53■□□□□ 0.4
PCF11-206ENST00000533018 TFDP3Q5H9I0 405 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 SIRPB2Q5JXA9 342 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 BLOC1S5Q8TDH9 187 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 RNF31Q96EP0 1072 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 C9orf72Q96LT7 481 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 VPS35Q96QK1 796 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 SLC25A18Q9H1K4 315 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 GOLPH3Q9H4A6 298 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 CLMPQ9H6B4 373 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 UCK1Q9HA47 277 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 ZNF624Q9P2J8 865 aaPredicted RBP17.53■□□□□ 0.4
PCF11-206ENST00000533018 SLC30A1Q9Y6M5 507 aa17.53■□□□□ 0.4
PCF11-206ENST00000533018 LOC101059948A0A1B0GTJ6 334 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 NKX2-8O15522 239 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 WISP1O95388 367 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 ITGB6P18564 788 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 CD68P34810 354 aaPredicted RBP17.52■□□□□ 0.4
PCF11-206ENST00000533018 HMGCLP35914 325 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 CCR10P46092 362 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 WASHC5Q12768 1159 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 PPP2R5EQ16537 467 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 FAM151BQ6UXP7 276 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 ATG14Q6ZNE5 492 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 TIPARPQ7Z3E1 657 aaKnown RBP17.52■□□□□ 0.4
PCF11-206ENST00000533018 GLT6D1Q7Z4J2 308 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 ZNF547Q8IVP9 402 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 IPMKQ8NFU5 416 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 BRSK1Q8TDC3 778 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 EFHD1Q9BUP0 239 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 TRIT1Q9H3H1 467 aaKnown RBP17.52■□□□□ 0.4
PCF11-206ENST00000533018 TRABDQ9H4I3 376 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 POT1Q9NUX5 634 aa17.52■□□□□ 0.4
PCF11-206ENST00000533018 GEMIN8Q9NWZ8 242 aaKnown RBP17.52■□□□□ 0.4
PCF11-206ENST00000533018 ZNF106Q9H2Y7 1883 aaKnown RBP17.52■□□□□ 0.39
PCF11-206ENST00000533018 MN1Q10571 1320 aaPredicted RBP17.51■□□□□ 0.39
PCF11-206ENST00000533018 LOC285095A0A1B0GVY8 99 aa17.51■□□□□ 0.39
PCF11-206ENST00000533018 BUD23O43709 281 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms