RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 XRCC1P18887 633 aaPredicted RBP14.52□□□□□ -0.09
VPS28-215ENST00000531924 COMTP21964 271 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 IDSP22304 550 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 HALP42357 657 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 UBE2IP63279 158 aaKnown RBP14.52□□□□□ -0.09
VPS28-215ENST00000531924 ZDHHC20Q5W0Z9 365 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 MFSD7Q6UXD7 560 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 TMEM26Q6ZUK4 368 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 TRAPPC5Q8IUR0 188 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 CNGA4Q8IV77 575 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 CCDC50Q8IVM0 306 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 P3H4Q92791 437 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 CXorf40BQ96DE9 158 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 TEKT5Q96M29 485 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 TGM7Q96PF1 710 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 TIMM29Q9BSF4 260 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 SLC25A18Q9H1K4 315 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 ADNPQ9H2P0 1102 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 TSPY26PQ9H489 355 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 TRABDQ9H4I3 376 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 UCK1Q9HA47 277 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 GEMIN8Q9NWZ8 242 aaKnown RBP14.52□□□□□ -0.09
VPS28-215ENST00000531924 KLHL8Q9P2G9 620 aaPredicted RBP14.52□□□□□ -0.09
VPS28-215ENST00000531924 FAM153AQ9UHL3 310 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 PILRAQ9UKJ1 303 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 INTUQ9ULD6 942 aa14.52□□□□□ -0.09
VPS28-215ENST00000531924 AKR1B15C9JRZ8 316 aaPredicted RBP14.51□□□□□ -0.09
VPS28-215ENST00000531924 CHUKO15111 745 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 PRKAR1AP10644 381 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 PTPN3P26045 913 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 RPL10P27635 214 aaKnown RBP14.51□□□□□ -0.09
VPS28-215ENST00000531924 WNT3AP56704 352 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 NFKB2Q00653 900 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 MC1RQ01726 317 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 CLCA4Q14CN2 919 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 PRKD1Q15139 912 aaPredicted RBP14.51□□□□□ -0.09
VPS28-215ENST00000531924 LLGL1Q15334 1064 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 SLC25A41Q8N5S1 370 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 BRSK1Q8TDC3 778 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 C9orf72Q96LT7 481 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 TRIM4Q9C037 500 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 ZCCHC2Q9C0B9 1178 aaKnown RBP14.51□□□□□ -0.09
VPS28-215ENST00000531924 SAE1Q9UBE0 346 aaPredicted RBP14.51□□□□□ -0.09
VPS28-215ENST00000531924 TRIM10Q9UDY6 481 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 SLC23A2Q9UGH3 650 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.51□□□□□ -0.09
VPS28-215ENST00000531924 SPO11Q9Y5K1 396 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 ADGRG1Q9Y653 693 aa14.51□□□□□ -0.09
VPS28-215ENST00000531924 ASH1LQ9NR48 2969 aaKnown RBP14.5□□□□□ -0.09
VPS28-215ENST00000531924 MN1Q10571 1320 aaPredicted RBP14.5□□□□□ -0.09
VPS28-215ENST00000531924 PSTPIP1O43586 416 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 ITGB6P18564 788 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 NFKB1P19838 968 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 CDKN2BP42772 138 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 MAGEA1P43355 309 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 CSRP3P50461 194 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 GFERP55789 205 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 POLE2P56282 527 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 ABHD18Q0P651 414 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 TMEM115Q12893 351 aaPredicted RBP14.5□□□□□ -0.09
VPS28-215ENST00000531924 KCNAB2Q13303 367 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 PPP2R5EQ16537 467 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 CCDC181Q5TID7 509 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 SPOCD1Q6ZMY3 1216 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 PID1Q7Z2X4 250 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 ZC3H18Q86VM9 953 aaKnown RBP14.5□□□□□ -0.09
VPS28-215ENST00000531924 RBM12BQ8IXT5 1001 aaKnown RBP14.5□□□□□ -0.09
VPS28-215ENST00000531924 UNC5BQ8IZJ1 945 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 ESX1Q8N693 406 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 RNF214Q8ND24 703 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 TADA1Q96BN2 335 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 ZDHHC12Q96GR4 267 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 SLC45A3Q96JT2 553 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 VPS35Q96QK1 796 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 FERMT1Q9BQL6 677 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 ULBP3Q9BZM4 244 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 APMAPQ9HDC9 416 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 POT1Q9NUX5 634 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.5□□□□□ -0.09
VPS28-215ENST00000531924 HACD3Q9P035 362 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 SCHIP1Q9P0W5 487 aaPredicted RBP14.5□□□□□ -0.09
VPS28-215ENST00000531924 ZNF624Q9P2J8 865 aaPredicted RBP14.5□□□□□ -0.09
VPS28-215ENST00000531924 PKP3Q9Y446 797 aa14.5□□□□□ -0.09
VPS28-215ENST00000531924 F5H423 210 aaPredicted RBP14.49□□□□□ -0.09
VPS28-215ENST00000531924 AURKAO14965 403 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 TOX3O15405 576 aaPredicted RBP14.49□□□□□ -0.09
VPS28-215ENST00000531924 NKX2-8O15522 239 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 KCNJ13O60928 360 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 ZRANB2O95218 330 aaKnown RBP eCLIP14.49□□□□□ -0.092e-7■■□□□ 13.6
VPS28-215ENST00000531924 EPOP01588 193 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 ANKRD34CP0C6C1 535 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 HMGCLP35914 325 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 SPAM1P38567 509 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 SLC19A1P41440 591 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 SEPHS1P49903 392 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 DRG2P55039 364 aaKnown RBP14.49□□□□□ -0.09
VPS28-215ENST00000531924 ATP13A5Q4VNC0 1218 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 TFDP3Q5H9I0 405 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 SIRPB2Q5JXA9 342 aa14.49□□□□□ -0.09
VPS28-215ENST00000531924 AGAP9Q5VTM2 703 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms