RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 TRIM38O00635 465 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 GRID2O43424 1007 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 SH3BP5O60239 455 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 MTX2O75431 263 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 CDK14O94921 469 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 CELA2BP08218 269 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-206ENST00000531480 GNPDA1P46926 289 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 ARL4CP56559 192 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 CALCOCO2Q13137 446 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 FRG1Q14331 258 aaKnown RBP14.28□□□□□ -0.12
CPSF1-206ENST00000531480 ITIH4Q14624 930 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 DBN1Q16643 649 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 HIF1AQ16665 826 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 INAVAQ3KP66 663 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 OGFOD3Q6PK18 319 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 DOK6Q6PKX4 331 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 ZDHHC24Q6UX98 284 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 CERS6Q6ZMG9 384 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 SERPINA9Q86WD7 417 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 GALNT13Q8IUC8 556 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 CCNJLQ8IV13 435 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 RASGEF1AQ8N9B8 481 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 GPR150Q8NGU9 434 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 LMX1AQ8TE12 382 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 SCG3Q8WXD2 468 aaKnown RBP14.28□□□□□ -0.12
CPSF1-206ENST00000531480 CCDC97Q96F63 343 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-206ENST00000531480 STAMBPL1Q96FJ0 436 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 ZNF514Q96K75 400 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-206ENST00000531480 LINC00615Q96LM1 132 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-206ENST00000531480 COPS8Q99627 209 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 TRIM56Q9BRZ2 755 aaKnown RBP14.28□□□□□ -0.12
CPSF1-206ENST00000531480 BOCQ9BWV1 1114 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 FAM129AQ9BZQ8 928 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 DPH5Q9H2P9 285 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 ARFGAP3Q9NP61 516 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 ARGLU1Q9NWB6 273 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-206ENST00000531480 SAMD15Q9P1V8 674 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 DMGDHQ9UI17 866 aaKnown RBP14.28□□□□□ -0.12
CPSF1-206ENST00000531480 CRLS1Q9UJA2 301 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 DNMT3AQ9Y6K1 912 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-206ENST00000531480 FAM169AQ9Y6X4 670 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 NCOR2Q9Y618 2525 aa14.28□□□□□ -0.12
CPSF1-206ENST00000531480 GOLGA4Q13439 2230 aaKnown RBP14.27□□□□□ -0.12
CPSF1-206ENST00000531480 LY6G6EA0A0G2JKS1 128 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 KMOO15229 486 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 EIF3HO15372 352 aaKnown RBP eCLIP14.27□□□□□ -0.13
CPSF1-206ENST00000531480 YY2O15391 372 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 ASMTLO95671 621 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 TTC4O95801 387 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 PRSS56P0CW18 603 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 CTSEP14091 401 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 PGAM1P18669 254 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 CTSCP53634 463 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 PRAMEP78395 509 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 CTBSQ01459 385 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 SLC7A5Q01650 507 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 DMPKQ09013 629 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 SEMA3AQ14563 771 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 TRADDQ15628 312 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 PROX2Q3B8N5 592 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 ZNF658BQ4V348 819 aaPredicted RBP14.27□□□□□ -0.13
CPSF1-206ENST00000531480 BCL7AQ4VC05 210 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 ZRANB3Q5FWF4 1079 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 LYPLAL1Q5VWZ2 237 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 STEAP4Q687X5 459 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 CES3Q6UWW8 571 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 RD3Q7Z3Z2 195 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 LRRTM4Q86VH4 590 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 C17orf82Q86X59 251 aaPredicted RBP14.27□□□□□ -0.13
CPSF1-206ENST00000531480 GKN2Q86XP6 184 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 IGDCC3Q8IVU1 814 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 CCL4L1Q8NHW4 92 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 FBXO25Q8TCJ0 367 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 PWWP2AQ96N64 755 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 TIMM29Q9BSF4 260 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 GSDMCQ9BYG8 508 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 FOXP3Q9BZS1 431 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 FAM96AQ9H5X1 160 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 ZDHHC18Q9NUE0 388 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 RPS6KL1Q9Y6S9 549 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 U3KQA8 63 aa14.27□□□□□ -0.13
CPSF1-206ENST00000531480 KLHL33A6NCF5 533 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 A6NCN8 305 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 CD3EAPO15446 510 aaKnown RBP14.26□□□□□ -0.13
CPSF1-206ENST00000531480 KCNJ13O60928 360 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 BANF1O75531 89 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 DKK1O94907 266 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 AP2A2O94973 939 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 VAPBO95292 243 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 POLBP06746 335 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 CEACAM1P13688 526 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 ATP1B2P14415 290 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-206ENST00000531480 PAMP19021 973 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 MSH3P20585 1137 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 PRLHRP49683 370 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 ILF3Q12906 894 aaKnown RBP eCLIP14.26□□□□□ -0.13
CPSF1-206ENST00000531480 C1orf61Q13536 156 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 CRYMQ14894 314 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 TYSND1Q2T9J0 566 aa14.26□□□□□ -0.13
CPSF1-206ENST00000531480 BBS9Q3SYG4 887 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms