RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.42□□□□□ -1.06
SSBP3-212ENST00000528930 SPC24Q8NBT2 197 aa8.42□□□□□ -1.06
SSBP3-212ENST00000528930 ZNF548Q8NEK5 533 aaPredicted RBP8.42□□□□□ -1.06
SSBP3-212ENST00000528930 EXD1Q8NHP7 514 aa8.42□□□□□ -1.06
SSBP3-212ENST00000528930 ZNF830Q96NB3 372 aaPredicted RBP8.42□□□□□ -1.06
SSBP3-212ENST00000528930 HERPUD2Q9BSE4 406 aa8.42□□□□□ -1.06
SSBP3-212ENST00000528930 TDRD1Q9BXT4 1180 aaKnown RBP8.42□□□□□ -1.06
SSBP3-212ENST00000528930 CEP41Q9BYV8 373 aa8.42□□□□□ -1.06
SSBP3-212ENST00000528930 LUC7LQ9NQ29 371 aaKnown RBP8.42□□□□□ -1.06
SSBP3-212ENST00000528930 NLGN3Q9NZ94 848 aa8.42□□□□□ -1.06
SSBP3-212ENST00000528930 SAE1Q9UBE0 346 aaPredicted RBP8.42□□□□□ -1.06
SSBP3-212ENST00000528930 CHKBQ9Y259 395 aa8.42□□□□□ -1.06
SSBP3-212ENST00000528930 OR1A2Q9Y585 309 aa8.42□□□□□ -1.06
SSBP3-212ENST00000528930 CSNK1G3Q9Y6M4 447 aa8.42□□□□□ -1.06
SSBP3-212ENST00000528930 LRP4O75096 1905 aa8.42□□□□□ -1.06
SSBP3-212ENST00000528930 UNC13CQ8NB66 2214 aa8.42□□□□□ -1.06
SSBP3-212ENST00000528930 JMJD1CQ15652 2540 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 NEMP2A6NFY4 417 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 TMEM202A6NGA9 273 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 K7ESM1 405 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 PSMD11O00231 422 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 PPP1R12AO14974 1030 aaPredicted RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 FFAR2O15552 330 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 CTIFO43310 598 aaKnown RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 AQP9O43315 295 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 PCCBP05166 539 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 HOXC4P09017 264 aaPredicted RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 CYP2A6P11509 494 aaPredicted RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 PECAM1P16284 738 aaPredicted RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 NR1D1P20393 614 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 CTNNA1P35221 906 aaKnown RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 ETV3P41162 512 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 CD86P42081 329 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 NR2C2P49116 596 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 AP1B1Q10567 949 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 MRPL49Q13405 166 aaKnown RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 C1orf61Q13536 156 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 TFDP2Q14188 446 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 NFATC4Q14934 902 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 ACOX1Q15067 660 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 PRKD1Q15139 912 aaPredicted RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 CDKN3Q16667 212 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 ALG11Q2TAA5 492 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 TEX44Q53QW1 395 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 TFDP3Q5H9I0 405 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 PNCKQ6P2M8 343 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 CRTC1Q6UUV9 634 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 ENPP7Q6UWV6 458 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 RFLNAQ6ZTI6 216 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 Q6ZVL8 140 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 GDF7Q7Z4P5 450 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 ZFAND4Q86XD8 727 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 PHACTR4Q8IZ21 702 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 FBXO39Q8N4B4 442 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 PAF1Q8N7H5 531 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 LRRC57Q8N9N7 239 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 TEX19Q8NA77 164 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 BTN2A2Q8WVV5 523 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 ANKRD7Q92527 254 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 TSACCQ96A04 125 aaPredicted RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 TADA1Q96BN2 335 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 DTD2Q96FN9 168 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 CALR3Q96L12 384 aaKnown RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 TBATAQ96M53 351 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 LYSMD1Q96S90 227 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 LRRC61Q9BV99 259 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 LGR4Q9BXB1 951 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 CLPBQ9H078 707 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 BRD8Q9H0E9 1235 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 PCDH9Q9HC56 1237 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 APOBEC3BQ9UH17 382 aaKnown RBP8.41□□□□□ -1.06
SSBP3-212ENST00000528930 TTLL3Q9Y4R7 772 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 PCDHA3Q9Y5H8 950 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 TACC2O95359 2948 aa8.41□□□□□ -1.06
SSBP3-212ENST00000528930 COL6A5A8TX70 2615 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 POLEQ07864 2286 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 MN1Q10571 1320 aaPredicted RBP8.4□□□□□ -1.06
SSBP3-212ENST00000528930 GRID2IPA4D2P6 1211 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 ANKRD66B4E2M5 251 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 LMO7DNF2Z398 122 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 K7EM74 188 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 TPP1O14773 563 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 YY2O15391 372 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 IPO7O95373 1038 aaKnown RBP8.4□□□□□ -1.06
SSBP3-212ENST00000528930 FUCA1P04066 466 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 TSHRP16473 764 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 NFKBIAP25963 317 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 PTPN3P26045 913 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 CTNNA2P26232 953 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 HTR1BP28222 390 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 CD68P34810 354 aaPredicted RBP8.4□□□□□ -1.06
SSBP3-212ENST00000528930 HK3P52790 923 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 KIAA1024LP59773 190 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 SRP54P61011 504 aaKnown RBP8.4□□□□□ -1.06
SSBP3-212ENST00000528930 RPL26P61254 145 aaKnown RBP8.4□□□□□ -1.06
SSBP3-212ENST00000528930 PPARDQ03181 441 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 DPTQ07507 201 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 WASHC5Q12768 1159 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 ARHGEF7Q14155 803 aa8.4□□□□□ -1.06
SSBP3-212ENST00000528930 PPP2R5EQ16537 467 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms