RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 IFNA14P01570 189 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 DBTP11182 482 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 KCNE1P15382 129 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 EDNRBP24530 442 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 MTHFRP42898 656 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 GDF5P43026 501 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 GPR1P46091 355 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 DGKQP52824 942 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 IL10RBQ08334 325 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 MTA1Q13330 715 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 NAE1Q13564 534 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 TRIP4Q15650 581 aaPredicted RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 FAM174BQ3ZCQ3 159 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 ZNF280BQ86YH2 543 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 OR7A2PQ8NGA2 310 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 BBS4Q96RK4 519 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 TSPAN18Q96SJ8 248 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 SLC7A5P2Q9GIP4 190 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 RHBGQ9H310 441 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 LRTM1Q9HBL6 345 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 MIOSQ9NXC5 875 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 MRPS23Q9Y3D9 190 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 A0A0U1RQF3 1178 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 SCAMP1O15126 338 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 RNASEH1O60930 286 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 COL6A1P12109 1028 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 PAFAH1B3Q15102 231 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 SETD9Q8NE22 299 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 TSEN34Q9BSV6 310 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 AARSD1Q9BTE6 412 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 EBPLQ9BY08 206 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 REXO4Q9GZR2 422 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 TMEM245Q9H330 911 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 ASF1AQ9Y294 204 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 ARIH1Q9Y4X5 557 aaPredicted RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 KCNE2Q9Y6J6 123 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 MYOCOSA0A1B0GUC4 107 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 KLF11O14901 512 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 CDK14O94921 469 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 CYP2A6P11509 494 aaPredicted RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 SELPP16109 830 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 PRKCQQ04759 706 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 BROXQ5VW32 411 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 TRAF7Q6Q0C0 670 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 FIBCD1Q8N539 461 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 C10orf53Q8N6V4 93 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 OR52J3Q8NH60 311 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 TRIM63Q969Q1 353 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 SKA1Q96BD8 255 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 GPR22Q99680 433 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 FAM124BQ9H5Z6 455 aaPredicted RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 CDV3Q9UKY7 258 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 DGKBQ9Y6T7 804 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 IGKV6D-21A0A0A0MT36 114 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 IGKV6-21A0A0C4DH24 114 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 FAM220BPB1ANY3 271 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 G3V2T6 193 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 NDST2P52849 883 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 CLDN10P78369 228 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 PURAQ00577 322 aaKnown RBP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 GALNT2Q10471 571 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 ZNF605Q86T29 641 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 TBC1D21Q8IYX1 336 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 NPWQ8N729 165 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 SUSD6Q92537 303 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 FEM1CQ96JP0 617 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 MAGEH1Q9H213 219 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 POLR3BQ9NW08 1133 aaPredicted RBP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 TRMUO75648 421 aaKnown RBP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 PPP2R1BP30154 601 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 WASP42768 502 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 AFF1P51825 1210 aaKnown RBP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 SFT2D3Q587I9 215 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 THOC7Q6I9Y2 204 aaKnown RBP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 KCTD13Q8WZ19 329 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 AHSPQ9NZD4 102 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 RAB23Q9ULC3 237 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 TLL2Q9Y6L7 1015 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 A0A0D9SEW6 157 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 KPNA5O15131 536 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 CLIC3O95833 236 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 PENKP01210 267 aaPredicted RBP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 AOC1P19801 751 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 SGCGQ13326 291 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 MADCAM1Q13477 382 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 DGKKQ5KSL6 1271 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 VN1R5Q7Z5H4 357 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 SIX5Q8N196 739 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 ZNF366Q8N895 744 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 TXNDC5Q8NBS9 432 aaKnown RBP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 MTERF1Q99551 399 aaKnown RBP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 PKP2Q99959 881 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 ZCCHC2Q9C0B9 1178 aaKnown RBP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 EPB41L1Q9H4G0 881 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 PNPLA8Q9NP80 782 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 CAB39Q9Y376 341 aaPredicted RBP11.59□□□□□ -0.55
SYNPO-204ENST00000519664 ALS2Q96Q42 1657 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 LAMB4A4D0S4 1761 aa11.59□□□□□ -0.55
SYNPO-204ENST00000519664 PNMA8CA0A1B0GUJ8 204 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms