RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 ZNF547Q8IVP9 402 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 REXO1L1PQ8IX06 675 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 RASGEF1CQ8N431 466 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 OR13C4Q8NGS5 318 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 WDR36Q8NI36 951 aaKnown RBP12.6□□□□□ -0.39
CLCN3-210ENST00000515420 SNIP1Q8TAD8 396 aaKnown RBP12.6□□□□□ -0.39
CLCN3-210ENST00000515420 SLC37A2Q8TED4 501 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 HEXDCQ8WVB3 486 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 PATE1Q8WXA2 126 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 TMEM159Q96B96 161 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 SH3KBP1Q96B97 665 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 ATXN7L3BQ96GX2 97 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 PBKQ96KB5 322 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 ZNF578Q96N58 590 aaPredicted RBP12.6□□□□□ -0.39
CLCN3-210ENST00000515420 STRADBQ9C0K7 418 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 ARFGAP3Q9NP61 516 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 KLC4Q9NSK0 619 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 TBC1D29Q9UFV1 150 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 FKBPLQ9UIM3 349 aa12.6□□□□□ -0.39
CLCN3-210ENST00000515420 TTC7AQ9ULT0 858 aaPredicted RBP12.6□□□□□ -0.39
CLCN3-210ENST00000515420 URB1O60287 2271 aaKnown RBP12.6□□□□□ -0.39
CLCN3-210ENST00000515420 E7EVH7 732 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 PPM1DO15297 605 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 BRINP1O60477 761 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 UGT1A9O60656 530 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 MTX2O75431 263 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 GAS8O95995 478 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 XRCC1P18887 633 aaPredicted RBP12.59□□□□□ -0.39
CLCN3-210ENST00000515420 UGT1A6P19224 532 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 ITGALP20701 1170 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 UGT1A1P22309 533 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 UGT1A4P22310 534 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 UGT1A3P35503 534 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 UGT1A5P35504 534 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 EPHA4P54764 986 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 INHBCP55103 352 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 GABREP78334 506 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 HHEXQ03014 270 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 ZFP36L1Q07352 338 aaKnown RBP12.59□□□□□ -0.39
CLCN3-210ENST00000515420 SNX1Q13596 522 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 LONRF2Q1L5Z9 754 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 TBC1D25Q3MII6 688 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 ZNF648Q5T619 568 aaPredicted RBP12.59□□□□□ -0.39
CLCN3-210ENST00000515420 AGAP9Q5VTM2 703 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 CRTC3Q6UUV7 619 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 SNX20Q7Z614 316 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 PIM3Q86V86 326 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 TRAPPC5Q8IUR0 188 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 SLITRK4Q8IW52 837 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 Q8N9G6 341 aaPredicted RBP12.59□□□□□ -0.39
CLCN3-210ENST00000515420 STYXQ8WUJ0 223 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 NAP1L3Q99457 506 aaPredicted RBP12.59□□□□□ -0.39
CLCN3-210ENST00000515420 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.59□□□□□ -0.39
CLCN3-210ENST00000515420 KCNF1Q9H3M0 494 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 EPB41L1Q9H4G0 881 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 ASB8Q9H765 288 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 SYNDIG1Q9H7V2 258 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 UCK1Q9HA47 277 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 UGT1A7Q9HAW7 530 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 UGT1A10Q9HAW8 530 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 UGT1A8Q9HAW9 530 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 ETNK1Q9HBU6 452 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 EIF2B3Q9NR50 452 aaKnown RBP12.59□□□□□ -0.39
CLCN3-210ENST00000515420 NLE1Q9NVX2 485 aaPredicted RBP12.59□□□□□ -0.39
CLCN3-210ENST00000515420 RIMKLBQ9ULI2 386 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 KCTD3Q9Y597 815 aa12.59□□□□□ -0.39
CLCN3-210ENST00000515420 A0A087WV48 116 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 IGHV1OR21-1A0A087WYE8 117 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 TRBV5-4A0A0C4DH59 114 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 MROH6A6NGR9 719 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 LILRA5A6NI73 299 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 AP3B1O00203 1094 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 B4GAT1O43505 415 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 EML2O95834 649 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 RALBP11234 206 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 MSH3P20585 1137 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 IDSP22304 550 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 ALDH4A1P30038 563 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 CXCR5P32302 372 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 TRA2AQ13595 282 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLCN3-210ENST00000515420 PTPRCAPQ14761 206 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 SKIDA1Q1XH10 827 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 MAP9Q49MG5 647 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 ABRAXAS1Q6UWZ7 409 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 PKD1L2Q7Z442 2459 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 RBM12BQ8IXT5 1001 aaKnown RBP12.58□□□□□ -0.4
CLCN3-210ENST00000515420 NXPE1Q8N323 547 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 RASGEF1AQ8N9B8 481 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 FGF11Q92914 225 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 PEX13Q92968 403 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 RANBP9Q96S59 729 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 OSGEPL1Q9H4B0 414 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 RAB6BQ9NRW1 208 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 THSD1Q9NS62 852 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 KCNK4Q9NYG8 393 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 SLC23A2Q9UGH3 650 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 CRLS1Q9UJA2 301 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 SATB2Q9UPW6 733 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 SLC30A1Q9Y6M5 507 aa12.58□□□□□ -0.4
CLCN3-210ENST00000515420 PIKFYVEQ9Y2I7 2098 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms