RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 HSP90AA5PQ58FG0 334 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 LYPLAL1Q5VWZ2 237 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 MINDY1Q8N5J2 469 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 NAT14Q8WUY8 206 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 TTC1Q99614 292 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 FAM167BQ9BTA0 163 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 EDEM2Q9BV94 578 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 PCYT1BQ9Y5K3 369 aaPredicted RBP29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 DGKBQ9Y6T7 804 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 GPR89AB7ZAQ6 455 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 CFAP99D6REC4 459 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 NUAK1O60285 661 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 DNAJC6O75061 913 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 GPR89BP0CG08 455 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 RALBP11234 206 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 PMLP29590 882 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 VSNL1P62760 191 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 IL9RQ01113 521 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 DET1Q7L5Y6 550 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 GALNT13Q8IUC8 556 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 RASGEF1AQ8N9B8 481 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 GPR150Q8NGU9 434 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 SCARF2Q96GP6 870 aaPredicted RBP29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 SLC13A1Q9BZW2 595 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 RXFP3Q9NSD7 469 aa29.26■■■□□ 2.27
LIMCH1-211ENST00000509638 H3BM21 787 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 FAM153BP0C7A2 387 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 OGNP20774 298 aaKnown RBP29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 BLKP51451 505 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 FRG1Q14331 258 aaKnown RBP29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 ITIH4Q14624 930 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 TCEA2Q15560 299 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 TYSND1Q2T9J0 566 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 FAM153CQ494X1 144 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 CRTC3Q6UUV7 619 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 CILP2Q8IUL8 1156 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 TRAPPC5Q8IUR0 188 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 RELL1Q8IUW5 271 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 DENND6AQ8IWF6 608 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 CALML6Q8TD86 181 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 HEXDCQ8WVB3 486 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 CDC42EP4Q9H3Q1 356 aaKnown RBP29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 LRRC4CQ9HCJ2 640 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 IARS2Q9NSE4 1012 aaKnown RBP29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 PRKAB1Q9Y478 270 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 DMXL1Q9Y485 3027 aa29.25■■■□□ 2.27
LIMCH1-211ENST00000509638 A0A1B0GTQ1 180 aa29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 GFRA3O60609 400 aa29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 SDC3O75056 442 aa29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 SLC1A2P43004 574 aa29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 GPX6P59796 221 aa29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 HNRNPKP61978 463 aaKnown RBP eCLIP29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 AASDHQ4L235 1098 aaPredicted RBP29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 PACS1Q6VY07 963 aa29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 SDCCAG8Q86SQ7 713 aaPredicted RBP29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 LRRC61Q9BV99 259 aa29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 RMI1Q9H9A7 625 aa29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 NINJ2Q9NZG7 142 aa29.24■■■□□ 2.27
LIMCH1-211ENST00000509638 OR2AG2A6NM03 316 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 CHUKO15111 745 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 OR1I1O60431 355 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 DFNA5O60443 496 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 TNFP01375 233 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 F7P08709 466 aaPredicted RBP29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 PPARGP37231 505 aaPredicted RBP29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 RXRGP48443 463 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 CCT8P50990 548 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 CTSCP53634 463 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 SHBQ15464 509 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 LMNTD2Q8IXW0 634 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 OR2M4Q96R27 311 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 VPS37BQ9H9H4 285 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 SLC17A6Q9P2U8 582 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 ZNHIT2Q9UHR6 403 aa29.23■■■□□ 2.27
LIMCH1-211ENST00000509638 GRID2O43424 1007 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 GSTA2P09210 222 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 EPHA8P29322 1005 aaPredicted RBP29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 NSG1P42857 185 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 CTBP1Q13363 440 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 SLMAPQ14BN4 828 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 PYCR3Q53H96 274 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 RNF187Q5TA31 235 aaPredicted RBP29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 WDR93Q6P2C0 686 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 C3orf62Q6ZUJ4 267 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 CLDN19Q8N6F1 224 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 SGF29Q96ES7 293 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 MOCS1Q9NZB8 636 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 TCRBV9S1A1TA0A576 114 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 NDUFS3O75489 264 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 ATP1B2P14415 290 aaPredicted RBP29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 NAA30Q147X3 362 aaPredicted RBP29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 KYNUQ16719 465 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 PLA2G4EQ3MJ16 856 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 PRRT3Q5FWE3 981 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 UBAP2Q5T6F2 1119 aaKnown RBP29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 LRRTM4Q86VH4 590 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 ZNF547Q8IVP9 402 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 CNTN4Q8IWV2 1026 aa29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 ZNF548Q8NEK5 533 aaPredicted RBP29.22■■■□□ 2.27
LIMCH1-211ENST00000509638 GABPB2Q8TAK5 448 aaPredicted RBP29.22■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms