RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZFAND5O76080 213 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 UGT1A1P22309 533 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 UBA1P22314 1058 aaKnown RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 APOBEC1P41238 236 aaKnown RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 RRS1Q15050 365 aaKnown RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 SLC25A30Q5SVS4 291 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 ZNF343Q6P1L6 599 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 FASTKD5Q7L8L6 764 aaKnown RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 GBGT1Q8N5D6 347 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 NGEFQ8N5V2 710 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 MYCT1Q8N699 235 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 RTP3Q9BQQ7 232 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 GPATCH1Q9BRR8 931 aaKnown RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 RABGAP1Q9Y3P9 1069 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 KLLNB2CW77 178 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 M0QZ24 198 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 LIPFP07098 398 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 COX7A2P14406 83 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 EPHA2P29317 976 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 CEACAM8P31997 349 aaPredicted RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 CHKAP35790 457 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 TBX4P57082 545 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 DCTN2Q13561 401 aaKnown RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 TDGQ13569 410 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 FASTKD1Q53R41 847 aaKnown RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 PAQR6Q6TCH4 344 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 Q6ZSR9 355 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 KRTAP5-5Q701N2 237 aaPredicted RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 DPPA4Q7L190 304 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 LRRC8DQ7L1W4 858 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 C11orf53Q8IXP5 236 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 VPS37AQ8NEZ2 397 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 PABPC5Q96DU9 382 aaKnown RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 ACOX2Q99424 681 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 HERPUD2Q9BSE4 406 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 PHF7Q9BWX1 381 aaPredicted RBP2.47□□□□□ -2.01
NUP54-208ENST00000508604 ZNF700Q9H0M5 742 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 PTTG2Q9NZH5 202 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 COQ3Q9NZJ6 369 aa2.47□□□□□ -2.01
NUP54-208ENST00000508604 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.47□□□□□ -2.01
NUP54-208ENST00000508604 C1orf226A1L170 272 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 LRRC53A6NM62 1247 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 SLC22A2O15244 555 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 PI15O43692 258 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 NBNO60934 754 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 AP2A2O94973 939 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 CSPG5O95196 566 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 NADKO95544 446 aaPredicted RBP2.46□□□□□ -2.02
NUP54-208ENST00000508604 RAF1P04049 648 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 CDAP32320 146 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 PDE1CQ14123 709 aaPredicted RBP2.46□□□□□ -2.02
NUP54-208ENST00000508604 EFR3AQ14156 821 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 TAF5Q15542 800 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 TEAD2Q15562 447 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 SGSM1Q2NKQ1 1148 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 CTU2Q2VPK5 515 aaKnown RBP2.46□□□□□ -2.02
NUP54-208ENST00000508604 NDUFAF5Q5TEU4 345 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 ATG16L1Q676U5 607 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 KLHL15Q96M94 604 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 P2RY12Q9H244 342 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 TTYH1Q9H313 450 aaPredicted RBP2.46□□□□□ -2.02
NUP54-208ENST00000508604 LTB4R2Q9NPC1 389 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 OR14J1Q9UGF5 321 aa2.46□□□□□ -2.02
NUP54-208ENST00000508604 PRAG1Q86YV5 1406 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 A0A1W2PP11 408 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 C5orf60A6NFR6 353 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 GPR137BO60478 399 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 IGKV3-15P01624 115 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 FRMD6-AS1P0C7T7 363 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 PSMC2P35998 433 aaKnown RBP2.45□□□□□ -2.02
NUP54-208ENST00000508604 UFM1P61960 85 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 GRAPQ13588 217 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 GLIPR1L2Q4G1C9 344 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 C2CD6Q53TS8 623 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 GSTA5Q7RTV2 222 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 ZNF584Q8IVC4 421 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 SUGP1Q8IWZ8 645 aaKnown RBP2.45□□□□□ -2.02
NUP54-208ENST00000508604 CCDC13Q8IYE1 715 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 SLC39A11Q8N1S5 342 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 TMEM178AQ8NBL3 297 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 ZCCHC10Q8TBK6 192 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 PRAC1Q96KF2 57 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 PYM1Q9BRP8 204 aaKnown RBP2.45□□□□□ -2.02
NUP54-208ENST00000508604 KLHL9Q9P2J3 617 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 DNAJB4Q9UDY4 337 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 STK39Q9UEW8 545 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 LIMA1Q9UHB6 759 aaKnown RBP2.45□□□□□ -2.02
NUP54-208ENST00000508604 RARRES3Q9UL19 164 aa2.45□□□□□ -2.02
NUP54-208ENST00000508604 IGKV6D-21A0A0A0MT36 114 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 KPNA7A9QM74 516 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 PLK4O00444 970 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 TCEA3O75764 348 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 BMP10O95393 424 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 PGFP49763 221 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 SP3Q02447 781 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 HNRNPDQ14103 355 aaKnown RBP2.44□□□□□ -2.02
NUP54-208ENST00000508604 TAF1BQ53T94 588 aaPredicted RBP2.44□□□□□ -2.02
NUP54-208ENST00000508604 MAP3K21Q5TCX8 1036 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 Q6ZR54 194 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms