RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PLOD1Q02809 727 aaPredicted RBP15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 INPP5AQ14642 412 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ANKS6Q68DC2 871 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 GLB1LQ6UWU2 654 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SYVN1Q86TM6 617 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CFAP52Q8N1V2 620 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SLC35B4Q969S0 331 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 FUBP1Q96AE4 644 aaKnown RBP15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SMIM14Q96QK8 99 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SLC30A3Q99726 388 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MGME1Q9BQP7 344 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CRISPLD1Q9H336 500 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CLK4Q9HAZ1 481 aaKnown RBP15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 AIG1Q9NVV5 245 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 THEGQ9P2T0 379 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RSL24D1Q9UHA3 163 aaKnown RBP15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TBX21Q9UL17 535 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 OAS3Q9Y6K5 1087 aaKnown RBP15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 A0A1W2PP18 115 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TCRBV5S2A0A599 114 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 KLK8O60259 260 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 VPS4BO75351 444 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 BMP10O95393 424 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CDK4P11802 303 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CDKN1CP49918 316 aaPredicted RBP15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 AGTR2P50052 363 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CDK9P50750 372 aaKnown RBP15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CCT8P50990 548 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RPS6KA2Q15349 733 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ATP6AP1Q15904 470 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 XKR7Q5GH72 579 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PAGE3Q5JUK9 113 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SPATA19Q7Z5L4 167 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SPRED1Q7Z699 444 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CAMK1DQ8IU85 385 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MDGA1Q8NFP4 955 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TSPEARQ8WU66 669 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 LINC01599Q8WXQ3 324 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 VPS33AQ96AX1 596 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 VWCEQ96DN2 955 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 C1QTNF3Q9BXJ4 246 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CCSER2Q9H7U1 834 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TLR8Q9NR97 1041 aaKnown RBP15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TAS2R13Q9NYV9 303 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SLC27A5Q9Y2P5 690 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ANKRD12Q6UB98 2062 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ENPP3O14638 875 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TPST1O60507 370 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CYBBP04839 570 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 IL10P22301 178 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MYF6P23409 242 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 FASP25445 335 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PSMA3P25788 255 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 GSK3BP49841 420 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RING1Q06587 406 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MRPL58Q14197 206 aaKnown RBP15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RCAN2Q14206 197 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SPATS1Q496A3 300 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CTXN3Q4LDR2 81 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RABL3Q5HYI8 236 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 UGT3A1Q6NUS8 523 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 FAM117BQ6P1L5 589 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TRPV3Q8NET8 790 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 OR7D4Q8NG98 312 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 OR4K2Q8NGD2 314 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 BIRC8Q96P09 236 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 GPR21Q99679 349 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ZBED2Q9BTP6 218 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SPATA7Q9P0W8 599 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SQORQ9Y6N5 450 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NPEPPSL1A6NEC2 478 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 VNN2O95498 520 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TSPAN12O95859 305 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PRLP01236 227 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MTHFD1P11586 935 aaKnown RBP15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PSMA4P25789 261 aaKnown RBP15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SLC6A4P31645 630 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 KCNQ1P51787 676 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RAD51Q06609 339 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 C5orf22Q49AR2 442 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 KCTD21Q4G0X4 260 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CCDC80Q76M96 950 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PTRH1Q86Y79 214 aaKnown RBP15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 LGI2Q8N0V4 545 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ZBTB8BQ8NAP8 495 aaPredicted RBP15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 OR2T11Q8NH01 316 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 DNAJB14Q8TBM8 379 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CENPNQ96H22 339 aaPredicted RBP15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RPL10LQ96L21 214 aaKnown RBP15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 B3GALT6Q96L58 329 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ADI1Q9BV57 179 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TRIM54Q9BYV2 358 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MUC3BQ9H195 1237 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PCTPQ9UKL6 214 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MYO9BQ13459 2157 aa15.94■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TRIM64A6NGJ6 449 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 STX16O14662 325 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 EOMESO95936 686 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 HK3P52790 923 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 UFM1P61960 85 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms