RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 DYRK3O43781 588 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 RFPL2O75678 378 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 PTTG1O95997 202 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ITGAMP11215 1152 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 MTHFD2P13995 350 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 INSRRP14616 1297 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 JUNDP17535 347 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 IL12AP29459 219 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 PIGAP37287 484 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ALDH7A1P49419 539 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 NDUFV1P49821 464 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 DIO3P55073 304 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ERVK-8P63133 956 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 IFITM2Q01629 132 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 CXCL9Q07325 125 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 KCNAB2Q13303 367 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 KRR1Q13601 381 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SELPLGQ14242 412 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 EML3Q32P44 896 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 LRIT3Q3SXY7 679 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 FUT11Q495W5 492 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SV2CQ496J9 727 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 CLEC20AQ6ZU45 233 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 RBM23Q86U06 439 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ZFAND4Q86XD8 727 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ARHGAP12Q8IWW6 846 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 TOP6BLQ8N6T0 577 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 OR8J3Q8NGG0 315 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 NDNFQ8TB73 568 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 VPS33AQ96AX1 596 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 TMEM74Q96NL1 305 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 DACH2Q96NX9 599 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 TMEM209Q96SK2 561 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 ASPSCR1Q9BZE9 553 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 TRIM8Q9BZR9 551 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 DSN1Q9H410 356 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 WDCPQ9H6R7 721 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SNTG2Q9NY99 539 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 KLQ9UEF7 1012 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 GIMAP2Q9UG22 337 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 VPS51Q9UID3 782 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 SCAF8Q9UPN6 1271 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 RBMX2Q9Y388 322 aaKnown RBP9.6□□□□□ -0.87
SYNE1-230ENST00000495090 PTGDR2Q9Y5Y4 395 aa9.6□□□□□ -0.87
SYNE1-230ENST00000495090 C9JVG2 144 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 TOR1BO14657 336 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 MAFKO60675 156 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 KPNA6O60684 536 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 SEC24AO95486 1093 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 S1PR4O95977 384 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 VTNP04004 478 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 LINC00032P0C843 101 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 CES1P23141 567 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 HOXC13P31276 330 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 TAF6P49848 677 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 CLCQ05315 142 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 CAMK2BQ13554 666 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 C6orf183Q5T699 404 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 NBPF12Q5TAG4 269 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-230ENST00000495090 SLC27A1Q6PCB7 646 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 PAQR9Q6ZVX9 377 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 LRRC49Q8IUZ0 686 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 LYSMD2Q8IV50 215 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 SETD9Q8NE22 299 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 LILRB4Q8NHJ6 448 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 GLMNQ92990 594 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF419Q96HQ0 510 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-230ENST00000495090 CELF6Q96J87 481 aaKnown RBP9.59□□□□□ -0.87
SYNE1-230ENST00000495090 RPL10LQ96L21 214 aaKnown RBP9.59□□□□□ -0.87
SYNE1-230ENST00000495090 TEX37Q96LM6 180 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF599Q96NL3 588 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 ATOH8Q96SQ7 321 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 C1QTNF3Q9BXJ4 246 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 ULBP1Q9BZM6 244 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 CXCL16Q9H2A7 254 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 DUSP21Q9H596 190 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 INTS7Q9NVH2 962 aaKnown RBP9.59□□□□□ -0.87
SYNE1-230ENST00000495090 NPAP1Q9NZP6 1156 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 OSGIN1Q9UJX0 560 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 NEU3Q9UQ49 428 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 ERVW-1Q9UQF0 538 aa9.59□□□□□ -0.87
SYNE1-230ENST00000495090 PDCD11Q14690 1871 aaKnown RBP9.59□□□□□ -0.87
SYNE1-230ENST00000495090 ANKRD34BA5PLL1 514 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 FAM172BPA6NC97 362 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 CLDN24A6NM45 220 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 YJEFN3A6XGL0 299 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 SYCE1LA8MT33 242 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 SNPHO15079 494 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 FGF10O15520 208 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-230ENST00000495090 SNX2O60749 519 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 KERAO60938 352 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 BEST1O76090 585 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 CNTN5O94779 1100 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 PRKD3O94806 890 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 CHEK2O96017 543 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 RPS17P08708 135 aaKnown RBP9.58□□□□□ -0.88
SYNE1-230ENST00000495090 IL1RNP18510 177 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 AGXTP21549 392 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 NR4A1P22736 598 aa9.58□□□□□ -0.88
SYNE1-230ENST00000495090 TCEA1P23193 301 aaKnown RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms