RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ZNF23P17027 643 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 PLD1Q13393 1074 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 ZRANB3Q5FWF4 1079 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 RNF219Q5W0B1 726 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 DDI1Q8WTU0 396 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 SPATA17Q96L03 361 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 OSBPL11Q9BXB4 747 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 EXD2Q9NVH0 621 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 SUCOQ9UBS9 1254 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 VPS28Q9UK41 221 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 AGO1Q9UL18 857 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 AZIN1O14977 448 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 ECI2O75521 394 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 SLC7A1P30825 629 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 CLCN2P51788 898 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 IST1P53990 364 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 CLYBLQ8N0X4 340 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 OR2T34Q8NGX1 318 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 OR2T3Q8NH03 318 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 PSKH2Q96QS6 385 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 CCDC68Q9H2F9 335 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 CLK4Q9HAZ1 481 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 CMTM6Q9NX76 183 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 RAI2Q9Y5P3 530 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 CHD5Q8TDI0 1954 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 ZNF840PA6NDX5 716 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 MOXD2PA6NHM9 499 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 PQBP1O60828 265 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 CTPS1P17812 591 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 FUT4P22083 530 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 ELK4P28324 431 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 MC4RP32245 332 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 SLC11A2P49281 568 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 TWF1Q12792 350 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 RFTN1Q14699 578 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 NHSL2Q5HYW2 709 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 SAMD4BQ5PRF9 694 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 ATXN7L2Q5T6C5 722 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 TRIM74Q86UV6 250 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 TRIM73Q86UV7 250 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 FBXO39Q8N4B4 442 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 OR10Q1Q8NGQ4 319 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 ISOC1Q96CN7 298 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 ADI1Q9BV57 179 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 PNPLA3Q9NST1 481 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 NLE1Q9NVX2 485 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 ARVCFO00192 962 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 CLOCKO15516 846 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 STC2O76061 302 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 GPX3P22352 226 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 MZF1P28698 734 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 C18orf21Q32NC0 220 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 TIGD2Q4W5G0 525 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 PYCR3Q53H96 274 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 FAM117BQ6P1L5 589 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 TBPL2Q6SJ96 375 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 SLC15A3Q8IY34 581 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 EFHD1Q9BUP0 239 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 SLC25A23Q9BV35 468 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 VN1R3Q9BXE9 311 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 TDRD1Q9BXT4 1180 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 MAGEH1Q9H213 219 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 XIRP2A4UGR9 3374 aa16.37■□□□□ 0.21
CCDC88B-210ENST00000494566 C8BP07358 591 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 ITGB6P18564 788 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 HSPA13P48723 471 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 ATN1P54259 1190 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 CLCQ05315 142 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 RAB44Q7Z6P3 723 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 GALNT7Q86SF2 657 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 EEF1AKMT1Q8WVE0 214 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 THAP11Q96EK4 314 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 EPB41L1Q9H4G0 881 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 TAS2R13Q9NYV9 303 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 CD300AQ9UGN4 299 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 POLG2Q9UHN1 485 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 FCF1Q9Y324 198 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 A8MX80 341 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 DLGAP1O14490 977 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 CDH4P55283 916 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 ARF5P84085 180 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 SEMG2Q02383 582 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 TNK2Q07912 1038 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 TRAF2Q12933 501 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 ZNF177Q13360 481 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 DNAJC14Q6Y2X3 702 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 ANKS3Q6ZW76 656 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 SNX29P2Q8IUI4 249 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 BBS5Q8N3I7 341 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 CARNMT1Q8N4J0 409 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 GPR150Q8NGU9 434 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 GIPC3Q8TF64 312 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 AUTS2Q8WXX7 1259 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 BIRC8Q96P09 236 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 SLC22A12Q96S37 553 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 TCF12Q99081 682 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 TM6SF2Q9BZW4 377 aa16.36■□□□□ 0.21
CCDC88B-210ENST00000494566 INTS7Q9NVH2 962 aaKnown RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms