RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 GRB7Q14451 532 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 CHRNA6Q15825 494 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 MMEL1Q495T6 779 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 PAOXQ6QHF9 649 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 MRPL43Q8N983 215 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 LKAAEAR1Q8TD35 194 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 SLC25A23Q9BV35 468 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 CIPCQ9C0C6 399 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 NUDT4Q9NZJ9 180 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 HECAQ9UBI9 543 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 POLG2Q9UHN1 485 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 EIF2B4Q9UI10 523 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 ZNF225Q9UK10 706 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 SARDHQ9UL12 918 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 PRSS21Q9Y6M0 314 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 E2F3O00716 465 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 ESRRBO95718 433 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 MLYCDO95822 493 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 LINC00032P0C843 101 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 UGT1A6P19224 532 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 UGT1A1P22309 533 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 UGT1A4P22310 534 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 ME2P23368 584 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 UGT1A3P35503 534 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 UGT1A5P35504 534 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 FUNDC1Q8IVP5 155 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 CBARPQ8N350 705 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 RNF148Q8N7C7 305 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 ESAMQ96AP7 390 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 ECHDC3Q96DC8 303 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 TUBGCP5Q96RT8 1024 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 C17orf80Q9BSJ5 609 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 HGH1Q9BTY7 390 aa20.87■□□□□ 0.93
CCDC88B-208ENST00000492980 GRM6O15303 877 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 CRCPO75575 148 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 DDX6P26196 483 aaKnown RBP eCLIP20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 ECT2LQ008S8 904 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 LYPLAL1Q5VWZ2 237 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 GRAMD4Q6IC98 578 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 CRTC1Q6UUV9 634 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 PCDH20Q8N6Y1 951 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 NUSAP1Q9BXS6 441 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 CRLS1Q9UJA2 301 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 ADAMTS6Q9UKP5 1117 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 LZTS1Q9Y250 596 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 LRCH1Q9Y2L9 728 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 TIMM22Q9Y584 194 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 NEDD8-MDP1E9PL57 170 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 ITGB6P18564 788 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 MSX2P35548 267 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 MS4A2Q01362 244 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 SEMG2Q02383 582 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 FLOT2Q14254 428 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 RBBP7Q16576 425 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 KIF19Q2TAC6 998 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 SBSNQ6UWP8 590 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 ADAMTSL2Q86TH1 951 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 CLDN19Q8N6F1 224 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 OR56A4Q8NGH8 313 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 SP7Q8TDD2 431 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 TUBGCP3Q96CW5 907 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 SUV39H2Q9H5I1 410 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 TLR9Q9NR96 1032 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 TSR3Q9UJK0 312 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 SLC4A7Q9Y6M7 1214 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 ANKRD12Q6UB98 2062 aa20.86■□□□□ 0.93
CCDC88B-208ENST00000492980 MRASO14807 208 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 BNIP3LO60238 219 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 NRP2O60462 931 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 LBPP18428 481 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 CTNNB1P35222 781 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 PSMD8P48556 350 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 GPR33Q49SQ1 333 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 TPRG1Q6ZUI0 275 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 GPR26Q8NDV2 337 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 GDPD5Q8WTR4 605 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 SCRN2Q96FV2 425 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 SLC25A13Q9UJS0 675 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 PPIL1Q9Y3C6 166 aa20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 KIAA0100Q14667 2235 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-208ENST00000492980 TRIM38O00635 465 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 VPS4BO75351 444 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 FGF19O95750 216 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 UROSP10746 265 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 PTPN2P17706 415 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 BMPR1AP36894 532 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 CCNHP51946 323 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 CDC16Q13042 620 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 PPIGQ13427 754 aaKnown RBP eCLIP20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 SLC5A9Q2M3M2 681 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 ANO7Q6IWH7 933 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 IZUMO2Q6UXV1 221 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 FRA10AC1Q70Z53 315 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 BBS2Q9BXC9 721 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 CPEB1Q9BZB8 566 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 CEP44Q9C0F1 390 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 BATF3Q9NR55 127 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 E7ENX8 843 aa20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 SLC25A14O95258 325 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-208ENST00000492980 RHOP08100 348 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms