RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 EFCAB7A8K855 629 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 LGALS16A8MUM7 142 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 A8MX80 341 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 K7EM74 188 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 PDE2AO00408 941 aaPredicted RBP13.05□□□□□ -0.32
HDAC3-213ENST00000492506 TRAFD1O14545 582 aaPredicted RBP13.05□□□□□ -0.32
HDAC3-213ENST00000492506 ZW10O43264 779 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 PRAMEF11O60813 436 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 ATP5HO75947 161 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 SERPINA4P29622 427 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 RAB15P59190 212 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 ZBED6P86452 979 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 CTBSQ01459 385 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 FMO1Q01740 532 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 ILF3Q12906 894 aaKnown RBP eCLIP13.05□□□□□ -0.32
HDAC3-213ENST00000492506 KRT31Q15323 416 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 TAF11Q15544 211 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 DBN1Q16643 649 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 TMEM71Q6P5X7 295 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 UNC5BQ8IZJ1 945 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 NLGN4XQ8N0W4 816 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 CBARPQ8N350 705 aaPredicted RBP13.05□□□□□ -0.32
HDAC3-213ENST00000492506 NLGN4YQ8NFZ3 816 aaPredicted RBP13.05□□□□□ -0.32
HDAC3-213ENST00000492506 SLC30A5Q8TAD4 765 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 TEKT4Q8WW24 435 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 APOBEC4Q8WW27 367 aaKnown RBP13.05□□□□□ -0.32
HDAC3-213ENST00000492506 DPYSL5Q9BPU6 564 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 C11orf70Q9BRQ4 267 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 FAM129AQ9BZQ8 928 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 IQCGQ9H095 443 aaKnown RBP13.05□□□□□ -0.32
HDAC3-213ENST00000492506 RAB17Q9H0T7 212 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 RABEP2Q9H5N1 569 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 ATP13A3Q9H7F0 1226 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 ZWILCHQ9H900 591 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 GPN2Q9H9Y4 310 aaPredicted RBP13.05□□□□□ -0.32
HDAC3-213ENST00000492506 LRRC4CQ9HCJ2 640 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 SHANK1Q9Y566 2161 aa13.05□□□□□ -0.32
HDAC3-213ENST00000492506 F8VZ95 297 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 UCHL3P15374 230 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 ACADSP16219 412 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 MAP4P27816 1152 aaKnown RBP13.04□□□□□ -0.32
HDAC3-213ENST00000492506 GNPDA1P46926 289 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 SEC24CP53992 1094 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 MC2RQ01718 297 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 KLRB1Q12918 225 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 ACOX1Q15067 660 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 DEFB109BQ30KR1 87 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 VWA3BQ502W6 1294 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 CRTC2Q53ET0 693 aaPredicted RBP13.04□□□□□ -0.32
HDAC3-213ENST00000492506 ATP1A1-AS1Q5TC04 95 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 IRGCQ6NXR0 463 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 WDR59Q6PJI9 974 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 HEATR4Q86WZ0 1026 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 FAM129CQ86XR2 697 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 FAM114A1Q8IWE2 563 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 SPOCK2Q92563 424 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 TEFMQ96QE5 360 aaKnown RBP13.04□□□□□ -0.32
HDAC3-213ENST00000492506 STK33Q9BYT3 514 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 TRIM7Q9C029 511 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 CATSPERBQ9H7T0 1116 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 B4GALT6Q9UBX8 382 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 FZD10Q9ULW2 581 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 TP53TG5Q9Y2B4 290 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 SLC17A4Q9Y2C5 497 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 PLEKHM1Q9Y4G2 1056 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 TMEM184BQ9Y519 407 aaPredicted RBP13.04□□□□□ -0.32
HDAC3-213ENST00000492506 LRRC42Q9Y546 428 aa13.04□□□□□ -0.32
HDAC3-213ENST00000492506 HIVEP3Q5T1R4 2406 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 ZSCAN9O15535 394 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-213ENST00000492506 PJA2O43164 708 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 DIAPH2O60879 1101 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 SKAP2O75563 359 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-213ENST00000492506 KRT3P12035 628 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 UNGP13051 313 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-213ENST00000492506 GPD1P21695 349 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 ADCY8P40145 1251 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 POLD2P49005 469 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 NDST2P52849 883 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 MLLT10P55197 1068 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 POLR2LP62875 67 aaKnown RBP13.03□□□□□ -0.32
HDAC3-213ENST00000492506 GPLD1P80108 840 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 CDK3Q00526 305 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 CDR2Q01850 454 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 ABHD18Q0P651 414 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 CNGA3Q16281 694 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 TCP11X2Q5H9J9 407 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 ANKRD20A2Q5SQ80 823 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 ERMARDQ5T6L9 678 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 THEMIS2Q5TEJ8 643 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 ANKRD20A1Q5TYW2 823 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 ANKRD20A3Q5VUR7 823 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 ZNF677Q86XU0 584 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 NRSN1Q8IZ57 195 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 KIAA1143Q96AT1 154 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-213ENST00000492506 NUS1Q96E22 293 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 SCARF2Q96GP6 870 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-213ENST00000492506 CELF6Q96J87 481 aaKnown RBP13.03□□□□□ -0.32
HDAC3-213ENST00000492506 CTRCQ99895 268 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 SLC39A8Q9C0K1 460 aa13.03□□□□□ -0.32
HDAC3-213ENST00000492506 ISCUQ9H1K1 167 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms