RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 LRP8Q14114 963 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 DBN1Q16643 649 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 GPR33Q49SQ1 333 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 LVRNQ6Q4G3 990 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 TMEM220Q6QAJ8 160 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 MAATS1Q7Z4T9 603 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 HOOK3Q86VS8 718 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 SFTPA2Q8IWL1 248 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 SLC35F3Q8IY50 421 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 PIANPQ8IYJ0 282 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 OTUD6BQ8N6M0 293 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 RASGEF1AQ8N9B8 481 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 GLMNQ92990 594 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 ZNF669Q96BR6 464 aaPredicted RBP11.69□□□□□ -0.54
HPS4-214ENST00000485842 COPS8Q99627 209 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 TRIM56Q9BRZ2 755 aaKnown RBP11.69□□□□□ -0.54
HPS4-214ENST00000485842 KIFC1Q9BW19 673 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 BOCQ9BWV1 1114 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 DPEP2Q9H4A9 486 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 MRM3Q9HC36 420 aaKnown RBP11.69□□□□□ -0.54
HPS4-214ENST00000485842 KLC4Q9NSK0 619 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 TREX1Q9NSU2 369 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 SPATS2LQ9NUQ6 558 aaKnown RBP11.69□□□□□ -0.54
HPS4-214ENST00000485842 DNAJC16Q9Y2G8 782 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 SNX24Q9Y343 169 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 MRFAP1Q9Y605 127 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 MAD1L1Q9Y6D9 718 aa11.69□□□□□ -0.54
HPS4-214ENST00000485842 GOLGA4Q13439 2230 aaKnown RBP11.69□□□□□ -0.54
HPS4-214ENST00000485842 ARHGEF17Q96PE2 2063 aaPredicted RBP11.69□□□□□ -0.54
HPS4-214ENST00000485842 TRBV5-4A0A0C4DH59 114 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 LY6G6EA0A0G2JKS1 128 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 CPED1A4D0V7 1026 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 SDR42E2A6NKP2 422 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 AGAP14A8MT82 685 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 CHUKO15111 745 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 SNX2O60749 519 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 BANF1O75531 89 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 ZNF7P17097 686 aaPredicted RBP11.68□□□□□ -0.54
HPS4-214ENST00000485842 PSMA3P25788 255 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 ACRV1P26436 265 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 MAGEA3P43357 314 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 RPL21P46778 160 aaKnown RBP11.68□□□□□ -0.54
HPS4-214ENST00000485842 MORF4L2Q15014 288 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 NR0B2Q15466 257 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 BBS9Q3SYG4 887 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 FASTKD1Q53R41 847 aaKnown RBP11.68□□□□□ -0.54
HPS4-214ENST00000485842 DNAJC21Q5F1R6 531 aaKnown RBP11.68□□□□□ -0.54
HPS4-214ENST00000485842 FNBP1LQ5T0N5 605 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 N4BP2L1Q5TBK1 243 aaPredicted RBP11.68□□□□□ -0.54
HPS4-214ENST00000485842 C8orf74Q6P047 294 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 GLRX5Q86SX6 157 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 ZNF547Q8IVP9 402 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 BEND7Q8N7W2 519 aaPredicted RBP11.68□□□□□ -0.54
HPS4-214ENST00000485842 ARL10Q8N8L6 244 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 PNPLA1Q8N8W4 532 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 MNS1Q8NEH6 495 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 OR4L1Q8NH43 312 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 ZDHHC1Q8WTX9 485 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 PEX13Q92968 403 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 MFSD3Q96ES6 412 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 SGF29Q96ES7 293 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 CATSPERZQ9NTU4 200 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 EVA1BQ9NVM1 165 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 ZDHHC3Q9NYG2 299 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 FAM8A1Q9UBU6 413 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 ANAPC5Q9UJX4 755 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 APOBEC2Q9Y235 224 aaKnown RBP11.68□□□□□ -0.54
HPS4-214ENST00000485842 U3KQA8 63 aa11.68□□□□□ -0.54
HPS4-214ENST00000485842 RFPL3O75679 317 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 VAPBO95292 243 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 CKMT1AP12532 417 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 PAMP19021 973 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 RPIAP49247 311 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 ACADVLP49748 655 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 DUSP3P51452 185 aaPredicted RBP11.67□□□□□ -0.54
HPS4-214ENST00000485842 MAZP56270 477 aaKnown RBP11.67□□□□□ -0.54
HPS4-214ENST00000485842 B4GALNT1Q00973 533 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 DHX9Q08211 1270 aaKnown RBP11.67□□□□□ -0.54
HPS4-214ENST00000485842 CALCOCO2Q13137 446 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 TUBB2AQ13885 445 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 SEPT7Q16181 437 aaKnown RBP11.67□□□□□ -0.54
HPS4-214ENST00000485842 KIAA0930Q6ICG6 404 aaPredicted RBP11.67□□□□□ -0.54
HPS4-214ENST00000485842 HIBCHQ6NVY1 386 aaPredicted RBP11.67□□□□□ -0.54
HPS4-214ENST00000485842 GUSBP11Q6P575 273 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 EFL1Q7Z2Z2 1120 aaKnown RBP11.67□□□□□ -0.54
HPS4-214ENST00000485842 LDB1Q86U70 411 aaPredicted RBP11.67□□□□□ -0.54
HPS4-214ENST00000485842 SLCO6A1Q86UG4 719 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 AGGF1Q8N302 714 aaeCLIP11.67□□□□□ -0.54
HPS4-214ENST00000485842 FAM181AQ8N9Y4 354 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 HEXDCQ8WVB3 486 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 PATE1Q8WXA2 126 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 STAMBPL1Q96FJ0 436 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 SIGLEC10Q96LC7 697 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 PWWP2AQ96N64 755 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 ERP44Q9BS26 406 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 TIMM29Q9BSF4 260 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 TUBB2BQ9BVA1 445 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 RAB17Q9H0T7 212 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 TOR4AQ9NXH8 423 aa11.67□□□□□ -0.54
HPS4-214ENST00000485842 NCKIPSDQ9NZQ3 722 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms