RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	ZFYVE1	Q9HBF4	777 aa		10.45	□□□□□ -0.74
HMGN1-215	ENST00000485550	PRDM8	Q9NQV8	689 aa		10.45	□□□□□ -0.74
HMGN1-215	ENST00000485550	SLC39A1	Q9NY26	324 aa		10.45	□□□□□ -0.74
HMGN1-215	ENST00000485550	UBP1	Q9NZI7	540 aa		10.45	□□□□□ -0.74
HMGN1-215	ENST00000485550	VPS18	Q9P253	973 aa		10.45	□□□□□ -0.74
HMGN1-215	ENST00000485550	ATXN10	Q9UBB4	475 aa		10.45	□□□□□ -0.74
HMGN1-215	ENST00000485550	LCMT1	Q9UIC8	334 aa		10.45	□□□□□ -0.74
HMGN1-215	ENST00000485550	TP53TG5	Q9Y2B4	290 aa		10.45	□□□□□ -0.74
HMGN1-215	ENST00000485550		F5H423	210 aa	Predicted RBP	10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550		K7EM74	188 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	GRID2	O43424	1007 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	CBFA2T2	O43439	604 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	NUAK1	O60285	661 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	MTX2	O75431	263 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	SLC25A14	O95258	325 aa	Predicted RBP	10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	MT-CYB	P00156	380 aa	Predicted RBP	10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	RNF224	P0DH78	156 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	GNLY	P22749	145 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	COL8A1	P27658	744 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	NOP2	P46087	812 aa	Known RBP	10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	FASLG	P48023	281 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	GPLD1	P80108	840 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	TRA2A	Q13595	282 aa	Known RBP eCLIP	10.44	□□□□□ -0.74	8e-24	■■□□□ 11.7
HMGN1-215	ENST00000485550	PDK1	Q15118	436 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	CLPP	Q16740	277 aa	Predicted RBP	10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	PLA2G4E	Q3MJ16	856 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	ODF2	Q5BJF6	829 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	FHL5	Q5TD97	284 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	ANKS6	Q68DC2	871 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	ZNF787	Q6DD87	383 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	CRTC3	Q6UUV7	619 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	UNC5B	Q8IZJ1	945 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	RNF214	Q8ND24	703 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	OR10G6	Q8NH81	332 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	APOBEC4	Q8WW27	367 aa	Known RBP	10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	RNF31	Q96EP0	1072 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	IMP4	Q96G21	291 aa	Known RBP	10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	SLC45A3	Q96JT2	553 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	TRIB3	Q96RU7	358 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	CTRC	Q99895	268 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	TBC1D10A	Q9BXI6	508 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	GPR63	Q9BZJ6	419 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	CARD9	Q9H257	536 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	OSGEPL1	Q9H4B0	414 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	BPIFA1	Q9NP55	256 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	KLC4	Q9NSK0	619 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	ABHD10	Q9NUJ1	306 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	SAE1	Q9UBE0	346 aa	Predicted RBP	10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	DNAJC16	Q9Y2G8	782 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	PCDHGA3	Q9Y5H0	932 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	LRBA	P50851	2863 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	CELSR2	Q9HCU4	2923 aa		10.44	□□□□□ -0.74
HMGN1-215	ENST00000485550	LOC101059948	A0A1B0GTJ6	334 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	RGSL1	A5PLK6	1076 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	AURKA	O14965	403 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	PPP1R12A	O14974	1030 aa	Predicted RBP	10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	MFAP3L	O75121	409 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	VPS4B	O75351	444 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	PMPCB	O75439	489 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	TPM1	P09493	284 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	ARHGAP25	P42331	645 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	CDK18	Q07002	472 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	SQSTM1	Q13501	440 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	TRIM14	Q14142	442 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	NOMO1	Q15155	1222 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	SEPT7	Q16181	437 aa	Known RBP	10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	ZNF569	Q5MCW4	686 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	KAZN	Q674X7	775 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	C16orf46	Q6P387	395 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	MFSD7	Q6UXD7	560 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	TMC3	Q7Z5M5	1100 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	SLC9B2	Q86UD5	537 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	VSTM4	Q8IW00	320 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	RHOT2	Q8IXI1	618 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	RAVER1	Q8IY67	606 aa	Known RBP	10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	TEX19	Q8NA77	164 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	CCDC112	Q8NEF3	446 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	SSC4D	Q8WTU2	575 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	DPYSL5	Q9BPU6	564 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	SLC25A51	Q9H1U9	297 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	STN1	Q9H668	368 aa	Known RBP	10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	GPN2	Q9H9Y4	310 aa	Predicted RBP	10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	GLOD4	Q9HC38	313 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	TRIM39	Q9HCM9	518 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	SARS2	Q9NP81	518 aa	Known RBP	10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	SCHIP1	Q9P0W5	487 aa	Predicted RBP	10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	CPNE7	Q9UBL6	633 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	TRIM10	Q9UDY6	481 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	SLC23A2	Q9UGH3	650 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	VPS4A	Q9UN37	437 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	ZNF711	Q9Y462	761 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	SPO11	Q9Y5K1	396 aa		10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	DIDO1	Q9BTC0	2240 aa	Known RBP	10.43	□□□□□ -0.74
HMGN1-215	ENST00000485550	MDC1	Q14676	2089 aa	Known RBP	10.42	□□□□□ -0.74
HMGN1-215	ENST00000485550		A6NCN8	305 aa		10.42	□□□□□ -0.74
HMGN1-215	ENST00000485550	SPOP	O43791	374 aa		10.42	□□□□□ -0.74
HMGN1-215	ENST00000485550	SEMA7A	O75326	666 aa		10.42	□□□□□ -0.74
HMGN1-215	ENST00000485550	F3	P13726	295 aa		10.42	□□□□□ -0.74
HMGN1-215	ENST00000485550	ZFX	P17010	805 aa	Predicted RBP	10.42	□□□□□ -0.74
HMGN1-215	ENST00000485550	BPI	P17213	487 aa		10.42	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms