RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ACOX1Q15067 660 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 PAFAH1B3Q15102 231 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 ALG11Q2TAA5 492 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 ASTE1Q2TB18 679 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 ANKRD20A8PQ5CZ79 823 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 TMEM201Q5SNT2 666 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 ZFYVE27Q5T4F4 411 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 CDCP2Q5VXM1 449 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 NCBP2-AS2Q69YL0 99 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 ESRP1Q6NXG1 681 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 GUSBP11Q6P575 273 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 LVRNQ6Q4G3 990 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 ENPP7Q6UWV6 458 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 LIPIQ6XZB0 460 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 USP45Q70EL2 814 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 GKN2Q86XP6 184 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 VSTM4Q8IW00 320 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 SDR16C5Q8N3Y7 309 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 PGBD5Q8N414 524 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 TEX26Q8N6G2 289 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 MAPK15Q8TD08 544 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 PDCD6IPQ8WUM4 868 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 NAT6Q93015 286 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 NUS1Q96E22 293 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 CCDC42Q96M95 316 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 WDR92Q96MX6 357 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 DEPDC7Q96QD5 511 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 PLCD4Q9BRC7 762 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 BOCQ9BWV1 1114 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 PACSIN1Q9BY11 444 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 TCEAL2Q9H3H9 227 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 NOD2Q9HC29 1040 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 ABHD10Q9NUJ1 306 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 KCTD5Q9NXV2 234 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 B4GALT6Q9UBX8 382 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 KLQ9UEF7 1012 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 PNMA8BQ9ULN7 279 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 PHTF1Q9UMS5 762 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 MYRFQ9Y2G1 1151 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 OR1A2Q9Y585 309 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 A0A087WV48 116 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 TMEM82A0PJX8 343 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 CPED1A4D0V7 1026 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 A8MX80 341 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 PSMD11O00231 422 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 MATN3O15232 486 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 YY2O15391 372 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 MFAP3LO75121 409 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 HEXIM1O94992 359 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 PGLSO95336 258 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 TNFP01375 233 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 HOXC4P09017 264 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 KRT10P13645 584 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 CA4P22748 312 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 KELP23276 732 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 CCNCP24863 283 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 TRIM23P36406 574 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 ARHGAP25P42331 645 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 KIR2DL2P43627 348 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 TAS2R40P59535 323 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 PLP2Q04941 152 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 ITKQ08881 620 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 TRAF2Q12933 501 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 ARHGEF7Q14155 803 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 MESDQ14696 234 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 ATP13A4Q4VNC1 1196 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 ARMC12Q5T9G4 340 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 PNCKQ6P2M8 343 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 EFL1Q7Z2Z2 1120 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 RD3Q7Z3Z2 195 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 CNGA4Q8IV77 575 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 RHOT2Q8IXI1 618 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 SLC35F3Q8IY50 421 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 NDUFAF2Q8N183 169 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 ARL10Q8N8L6 244 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 PLA2G15Q8NCC3 412 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 OR56A4Q8NGH8 313 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 PCDH19Q8TAB3 1148 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 WDR48Q8TAF3 677 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 SLC35G2Q8TBE7 412 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 MAML1Q92585 1016 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 FATE1Q969F0 183 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 TSACCQ96A04 125 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 FAF2Q96CS3 445 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 MAP6Q96JE9 813 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 COQ10AQ96MF6 247 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 NSMCE3Q96MG7 304 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 ZNF830Q96NB3 372 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 SEMA3CQ99985 751 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 ANP32EQ9BTT0 268 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 BDH2Q9BUT1 245 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 POLR1EQ9GZS1 481 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 CLPBQ9H078 707 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 WDR26Q9H7D7 661 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 NHEJ1Q9H9Q4 299 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 NT5MQ9NPB1 228 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 KLHL14Q9P2G3 628 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 AMACRQ9UHK6 382 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 DGKBQ9Y6T7 804 aa6.79□□□□□ -1.32
CCDC88A-213ENST00000476903 CHD6Q8TD26 2715 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms