RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 MICALCLQ6ZW33 695 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 USP30Q70CQ3 517 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 PHYKPLQ8IUZ5 450 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 SLC22A9Q8IVM8 553 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 AADATQ8N5Z0 425 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 CD200R1Q8TD46 325 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 GLYATL1Q969I3 302 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 SHDQ96IW2 340 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 UHRF1Q96T88 793 aaPredicted RBP12.69□□□□□ -0.38
VPS13D-205ENST00000473099 PLCD4Q9BRC7 762 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 RIOK2Q9BVS4 552 aaKnown RBP12.69□□□□□ -0.38
VPS13D-205ENST00000473099 KDM4CQ9H3R0 1056 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 TFB2MQ9H5Q4 396 aaKnown RBP12.69□□□□□ -0.38
VPS13D-205ENST00000473099 ZDHHC4Q9NPG8 344 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 SPATS2LQ9NUQ6 558 aaKnown RBP12.69□□□□□ -0.38
VPS13D-205ENST00000473099 ZNF358Q9NW07 568 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 XPR1Q9UBH6 696 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 CD84Q9UIB8 345 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 MMP17Q9ULZ9 603 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 SORCS3Q9UPU3 1222 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 ITM2BQ9Y287 266 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 NCKAP1Q9Y2A7 1128 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 MED16Q9Y2X0 877 aa12.69□□□□□ -0.38
VPS13D-205ENST00000473099 CEP192Q8TEP8 1941 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 A0A1W2PQF6 199 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 SYCE1LA8MT33 242 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 TMEM114B3SHH9 223 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 TARM1B6A8C7 271 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 G3V2L1 256 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 GPR39O43194 453 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 ADAM23O75077 832 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 SMIM24O75264 130 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 RECQL5O94762 991 aaPredicted RBP12.68□□□□□ -0.38
VPS13D-205ENST00000473099 GSTM1P09488 218 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 CBSLP0DN79 551 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 TROVE2P10155 538 aaKnown RBP eCLIP12.68□□□□□ -0.38
VPS13D-205ENST00000473099 ATP1B2P14415 290 aaPredicted RBP12.68□□□□□ -0.38
VPS13D-205ENST00000473099 CD1DP15813 335 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 TFEBP19484 476 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 MSH3P20585 1137 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 DGKAP23743 735 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 ATP5F1P24539 256 aaPredicted RBP12.68□□□□□ -0.38
VPS13D-205ENST00000473099 TEAD1P28347 426 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 CBSP35520 551 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 SERPINB5P36952 375 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 GLRBP48167 497 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 CLCN7P51798 805 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 DNAJB13P59910 316 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 NAA20P61599 178 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 IRX4P78413 519 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 GSTM4Q03013 218 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 DLG1Q12959 904 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 NEK5Q6P3R8 708 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 PAQR3Q6TCH7 311 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.68□□□□□ -0.38
VPS13D-205ENST00000473099 RFLNAQ6ZTI6 216 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 PIM3Q86V86 326 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 SPATS2Q86XZ4 545 aaKnown RBP12.68□□□□□ -0.38
VPS13D-205ENST00000473099 TMPRSS6Q8IU80 811 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 ADHFE1Q8IWW8 467 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 ANKS4BQ8N8V4 417 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 PNPLA1Q8N8W4 532 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 STAG3L4Q8TBR4 150 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 SCAMP4Q969E2 229 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 SIPA1Q96FS4 1042 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 C7orf26Q96N11 449 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 MECRQ9BV79 373 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 C1QTNF7Q9BXJ2 289 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 FAM107BQ9H098 131 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 EPHX3Q9H6B9 360 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 PREBQ9HCU5 417 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 FGFR1OP2Q9NVK5 253 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 THAP1Q9NVV9 213 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 OXSMQ9NWU1 459 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 FBXL12Q9NXK8 326 aa12.68□□□□□ -0.38
VPS13D-205ENST00000473099 A0A1W2PP55 124 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 TK2O00142 265 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 PLRG1O43660 514 aaKnown RBP12.67□□□□□ -0.38
VPS13D-205ENST00000473099 MMP20O60882 483 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 SNNO75324 88 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-205ENST00000473099 RNASEH2AO75792 299 aaKnown RBP12.67□□□□□ -0.38
VPS13D-205ENST00000473099 PCDH8O95206 1070 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 SLC25A14O95258 325 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-205ENST00000473099 TGDSO95455 350 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 FTH1P02794 183 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 TPBGLP0DKB5 382 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 ACADMP11310 421 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 FGF3P11487 239 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-205ENST00000473099 ENO3P13929 434 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-205ENST00000473099 IL9P15248 144 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 GM2AP17900 193 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 GPR1P46091 355 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 RPS21P63220 83 aaKnown RBP12.67□□□□□ -0.38
VPS13D-205ENST00000473099 MAP7D1Q3KQU3 841 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 KIAA1211LQ6NV74 962 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 TMEM207Q6UWW9 146 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 FAM47EQ6ZV65 393 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 PIGWQ7Z7B1 504 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 ISCA2Q86U28 154 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 C10orf107Q8IVU9 208 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms