RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 C16orf72Q14CZ0 275 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 KCNT1Q5JUK3 1230 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 FAM183BPQ6ZVS7 135 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 DDIASQ8IXT1 998 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 APOBEC4Q8WW27 367 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 FCGR1BQ92637 280 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ACSF2Q96CM8 615 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 MBOAT4Q96T53 435 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 MRPL4Q9BYD3 311 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 MTMR12Q9C0I1 747 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 CHST8Q9H2A9 424 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 DSN1Q9H410 356 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 TFB2MQ9H5Q4 396 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 TUT1Q9H6E5 874 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 POLR1BQ9H9Y6 1135 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 GJD2Q9UKL4 321 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 AP4E1Q9UPM8 1137 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 FAM172BPA6NC97 362 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 H0Y626 953 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 TNFRSF10AO00220 468 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 KCNN4O15554 427 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 STAG3L1P0CL83 205 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 MATN1P21941 496 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 PIK3CBP42338 1070 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 GSSP48637 474 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 SOX10P56693 466 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 NKX3-2P78367 333 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF45Q02386 682 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF181Q2M3W8 571 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ARHGAP15Q53QZ3 475 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 PPM1JQ5JR12 505 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 CPZQ66K79 652 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 THOC7Q6I9Y2 204 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 EFL1Q7Z2Z2 1120 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ATCAYQ86WG3 371 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 KLHDC8AQ8IYD2 350 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 LAS2Q8IYD9 372 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 KIAA1143Q96AT1 154 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 KCTD15Q96SI1 283 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 KCNJ15Q99712 375 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 GLIS2Q9BZE0 524 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 SYBUQ9NX95 663 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 GABBR1Q9UBS5 961 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 KLHL21Q9UJP4 597 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 PCDHGB2Q9Y5G2 931 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 SPO11Q9Y5K1 396 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 UBA6A0AVT1 1052 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 TK2O00142 265 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 DSCR3O14972 297 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 UBDO15205 165 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 MFSD11O43934 449 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SCELO95171 688 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF182P17025 639 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 OPRL1P41146 370 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 ABRQ12979 859 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 BAMBIQ13145 260 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 MTMR2Q13614 643 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 MBTPS1Q14703 1052 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 EIF4HQ15056 248 aaKnown RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CYP20A1Q6UW02 462 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CLVS1Q8IUQ0 354 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF485Q8NCK3 441 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 HRASLS5Q96KN8 279 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SPATA33Q96N06 139 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 OMDQ99983 421 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SP110Q9HB58 689 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 DIABLOQ9NR28 239 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 DNAJB9Q9UBS3 223 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 HMGXB4Q9UGU5 601 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 FBXW11Q9UKB1 542 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 INTS6Q9UL03 887 aaKnown RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 BTRCQ9Y297 605 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 LOC100653049A0A140TA62 436 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM150BA6NC51 233 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 SYCE1LA8MT33 242 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 DEAF1O75398 565 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 KRT34O76011 436 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 OCM2P0CE71 109 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 OCMP0CE72 109 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 NFKB1P19838 968 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 RGS7P49802 495 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 NUDT2P50583 147 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CRYBA2P53672 197 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 RAB10P61026 200 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 KRT80Q6KB66 452 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 LRRC69Q6ZNQ3 347 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 PRICKLE2Q7Z3G6 844 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 RPAP3Q9H6T3 665 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-220ENST00000471834 TRIM43BA6NCK2 446 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 C19orf81C9J6K1 198 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 AOC2O75106 756 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 AMHP03971 560 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 RXRGP48443 463 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 GTF2A2P52657 109 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 EFNB1P98172 346 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 CD300CQ08708 224 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 BFSP2Q13515 415 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 MFSD13AQ14CX5 517 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 ALFQ53S48 1182 aa5.3□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF678Q5SXM1 525 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms