RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 LLGL1Q15334 1064 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 TBR1Q16650 682 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 PLA2G4EQ3MJ16 856 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 TFDP3Q5H9I0 405 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 CEACAM20Q6UY09 585 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 PLXDC1Q8IUK5 500 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 KATNAL2Q8IYT4 538 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 CACNA2D3Q8IZS8 1091 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 P3H4Q92791 437 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 RTP4Q96DX8 246 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 VAT1Q99536 393 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 ZPBPQ9BS86 351 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 SLC12A9Q9BXP2 914 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 BPIFA1Q9NP55 256 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 FBXO8Q9NRD0 319 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 SCHIP1Q9P0W5 487 aaPredicted RBP16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 TMPRSS11EQ9UL52 423 aa16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 MN1Q10571 1320 aaPredicted RBP16.33■□□□□ 0.2
CCDC28B-204ENST00000469003 hCG_1818297A0A087WSY0 165 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 MTX2O75431 263 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 ZRANB2O95218 330 aaKnown RBP eCLIP16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 LCA5LO95447 670 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 VIPP01282 170 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 TNNT3P45378 269 aaPredicted RBP16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 CYP4F2P78329 520 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 ADCY2Q08462 1091 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 NOMO1Q15155 1222 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 ATP13A5Q4VNC0 1218 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 KHDC1Q4VXA5 237 aaKnown RBP16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 SIRPB2Q5JXA9 342 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 ZDHHC20Q5W0Z9 365 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 SARM1Q6SZW1 724 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 TMEM26Q6ZUK4 368 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 ZC3H18Q86VM9 953 aaKnown RBP16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 ZNF547Q8IVP9 402 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 TRIM48Q8IWZ4 208 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 RCOR2Q8IZ40 523 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 TTC30BQ8N4P2 665 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 TC2NQ8N9U0 490 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 DTX3LQ8TDB6 740 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 MRGPRX2Q96LB1 330 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 FCRL5Q96RD9 977 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 SPRY4Q9C004 299 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 GOLPH3Q9H4A6 298 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 KLHL8Q9P2G9 620 aaPredicted RBP16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 ZNF624Q9P2J8 865 aaPredicted RBP16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 PILRAQ9UKJ1 303 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 DNAJC16Q9Y2G8 782 aa16.32■□□□□ 0.2
CCDC28B-204ENST00000469003 PDZK1P1A8MUH7 402 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 HACD1B0YJ81 288 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 C9P02748 559 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 ANKRD34CP0C6C1 535 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 SFTPCP11686 197 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 LIFP15018 202 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 SLC19A1P41440 591 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 TMEM115Q12893 351 aaPredicted RBP16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 NFATC3Q12968 1075 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 C11orf63Q6NUN7 778 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 ABRAXAS1Q6UWZ7 409 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 WASH2PQ6VEQ5 465 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 PID1Q7Z2X4 250 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 ZNF567Q8N184 647 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 SLC25A41Q8N5S1 370 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 BRSK1Q8TDC3 778 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 OXNAD1Q96HP4 312 aaPredicted RBP16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 RBM41Q96IZ5 413 aaKnown RBP16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 QKIQ96PU8 341 aaKnown RBP eCLIP16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 CTRCQ99895 268 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 WASH6PQ9NQA3 447 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 OGFRQ9NZT2 677 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 HACD3Q9P035 362 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 KLHL3Q9UH77 587 aa16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.31■□□□□ 0.2
CCDC28B-204ENST00000469003 CAPN5O15484 640 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 SLC28A2O43868 658 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 UBXN7O94888 489 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 FAM87AP0C7U9 286 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 BRAFP15056 766 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 VCLP18206 1134 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 ITGB6P18564 788 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 HLA-DPA1P20036 260 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 IDSP22304 550 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 MAP4P27816 1152 aaKnown RBP16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 SPAM1P38567 509 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 CHRNA4P43681 627 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 MARCKSL1P49006 195 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 MPP3Q13368 585 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 GTF2H3Q13889 308 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 SLC1A5Q15758 541 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 SEPT7Q16181 437 aaKnown RBP16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 PPP2R5EQ16537 467 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 AGAP9Q5VTM2 703 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 C11orf96Q7Z7L8 435 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 TRAPPC5Q8IUR0 188 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 CCDC50Q8IVM0 306 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 CCDC170Q8IYT3 715 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 NLGN4XQ8N0W4 816 aa16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 NLGN4YQ8NFZ3 816 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-204ENST00000469003 GDAP1Q8TB36 358 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms