RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 SEPT7Q16181 437 aaKnown RBP15.16■□□□□ 0.02
SKA3-204ENST00000462482 SKIDA1Q1XH10 827 aa15.16■□□□□ 0.02
SKA3-204ENST00000462482 CRTC2Q53ET0 693 aaPredicted RBP15.16■□□□□ 0.02
SKA3-204ENST00000462482 ZNF648Q5T619 568 aaPredicted RBP15.16■□□□□ 0.02
SKA3-204ENST00000462482 TIPARPQ7Z3E1 657 aaKnown RBP15.16■□□□□ 0.02
SKA3-204ENST00000462482 TMC3Q7Z5M5 1100 aa15.16■□□□□ 0.02
SKA3-204ENST00000462482 VSIG1Q86XK7 387 aa15.16■□□□□ 0.02
SKA3-204ENST00000462482 RFX6Q8HWS3 928 aa15.16■□□□□ 0.02
SKA3-204ENST00000462482 RASGRP3Q8IV61 690 aa15.16■□□□□ 0.02
SKA3-204ENST00000462482 PLD5Q8N7P1 536 aa15.16■□□□□ 0.02
SKA3-204ENST00000462482 STAMBPL1Q96FJ0 436 aa15.16■□□□□ 0.02
SKA3-204ENST00000462482 CEP41Q9BYV8 373 aa15.16■□□□□ 0.02
SKA3-204ENST00000462482 KCTD3Q9Y597 815 aa15.16■□□□□ 0.02
SKA3-204ENST00000462482 SPTA1P02549 2419 aa15.16■□□□□ 0.02
SKA3-204ENST00000462482 CHUKO15111 745 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 NDST3O95803 873 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 DLGAP3O95886 979 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 C9P02748 559 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 CCNYL3P0C7X3 344 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 HNRNPH3P31942 346 aaKnown RBP15.15■□□□□ 0.02
SKA3-204ENST00000462482 CASRP41180 1078 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 SEPHS1P49903 392 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 GFERP55789 205 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 TRIM14Q14142 442 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 IL11RAQ14626 422 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 ZDHHC20Q5W0Z9 365 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 SLC9A4Q6AI14 798 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 KLHL35Q6PF15 583 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 TRAPPC5Q8IUR0 188 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 RHOT2Q8IXI1 618 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 OR8K1Q8NGG5 319 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 BRSK1Q8TDC3 778 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 OR6C1Q96RD1 312 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 TRIB3Q96RU7 358 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 PACSIN1Q9BY11 444 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 ZCCHC2Q9C0B9 1178 aaKnown RBP15.15■□□□□ 0.02
SKA3-204ENST00000462482 ZNF71Q9NQZ8 489 aaPredicted RBP15.15■□□□□ 0.02
SKA3-204ENST00000462482 DDX56Q9NY93 547 aaKnown RBP15.15■□□□□ 0.02
SKA3-204ENST00000462482 ADGRG1Q9Y653 693 aa15.15■□□□□ 0.02
SKA3-204ENST00000462482 MYO18BQ8IUG5 2567 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 A0A0A6YYK5 440 aaPredicted RBP15.14■□□□□ 0.01
SKA3-204ENST00000462482 SSU72P8A0A1W2PR75 194 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 CBFA2T2O43439 604 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 KCNJ13O60928 360 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 PMPCBO75439 489 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 MT-ND3P03897 115 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 BPIP17213 487 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 OAS2P29728 719 aaKnown RBP15.14■□□□□ 0.01
SKA3-204ENST00000462482 DLSTP36957 453 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 SLC19A1P41440 591 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 DYNLT1P63172 113 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 LACTB2Q53H82 288 aaPredicted RBP15.14■□□□□ 0.01
SKA3-204ENST00000462482 LRRC38Q5VT99 294 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 AGAP9Q5VTM2 703 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 CACHD1Q5VU97 1274 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 IRGCQ6NXR0 463 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 ABRAXAS1Q6UWZ7 409 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 WASH2PQ6VEQ5 465 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 SLC35G2Q8TBE7 412 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 EID2BQ96D98 161 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 VPS35Q96QK1 796 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 EPN3Q9H201 632 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 TRABDQ9H4I3 376 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 ZNF768Q9H5H4 540 aaKnown RBP15.14■□□□□ 0.01
SKA3-204ENST00000462482 GLOD4Q9HC38 313 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 PDE7BQ9NP56 450 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 WASH6PQ9NQA3 447 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 SIDT1Q9NXL6 827 aaKnown RBP15.14■□□□□ 0.01
SKA3-204ENST00000462482 SCHIP1Q9P0W5 487 aaPredicted RBP15.14■□□□□ 0.01
SKA3-204ENST00000462482 SLC23A2Q9UGH3 650 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 LNPEPQ9UIQ6 1025 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 KCND3Q9UK17 655 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 NENFQ9UMX5 172 aa15.14■□□□□ 0.01
SKA3-204ENST00000462482 SCN8AQ9UQD0 1980 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 MKRN2OSH3BPM6 223 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 MTX2O75431 263 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 KATNA1O75449 491 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 KIAA0754O94854 1291 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 NDUFA10O95299 355 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 TNNT1P13805 278 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 RPL10P27635 214 aaKnown RBP15.13■□□□□ 0.01
SKA3-204ENST00000462482 CAPZBP47756 277 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 ARL4DP49703 201 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 TFDP2Q14188 446 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 TEX44Q53QW1 395 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 PRSS42Q7Z5A4 293 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 PPP1R3BQ86XI6 285 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 RHOT1Q8IXI2 618 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 GALNT6Q8NCL4 622 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 SPATA22Q8NHS9 363 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 RNF25Q96BH1 459 aaPredicted RBP15.13■□□□□ 0.01
SKA3-204ENST00000462482 ABHD17AQ96GS6 310 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 ELMO2Q96JJ3 720 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 CCDC42Q96M95 316 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.13■□□□□ 0.01
SKA3-204ENST00000462482 OGFRQ9NZT2 677 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 ZNF624Q9P2J8 865 aaPredicted RBP15.13■□□□□ 0.01
SKA3-204ENST00000462482 TRIM10Q9UDY6 481 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 FAM153AQ9UHL3 310 aa15.13■□□□□ 0.01
SKA3-204ENST00000462482 CROTQ9UKG9 612 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms