RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 KCNJ13O60928 360 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 ITGA2BP08514 1039 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 VCLP18206 1134 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 HHEXQ03014 270 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 MSLNQ13421 630 aaPredicted RBP22.67■■□□□ 1.22
PTPN4-208ENST00000460289 COL28A1Q2UY09 1125 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 KHDC1Q4VXA5 237 aaKnown RBP22.67■■□□□ 1.22
PTPN4-208ENST00000460289 CHCHD2P9Q5T1J5 151 aaPredicted RBP22.67■■□□□ 1.22
PTPN4-208ENST00000460289 DENND5AQ6IQ26 1287 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 SLITRK4Q8IW52 837 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 DDHD1Q8NEL9 900 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 AHCYL2Q96HN2 611 aaKnown RBP22.67■■□□□ 1.22
PTPN4-208ENST00000460289 CMKLR1Q99788 373 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 LDHAL6BQ9BYZ2 381 aaPredicted RBP22.67■■□□□ 1.22
PTPN4-208ENST00000460289 LRRC40Q9H9A6 602 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 PRDM8Q9NQV8 689 aa22.67■■□□□ 1.22
PTPN4-208ENST00000460289 AKAP7Q9P0M2 348 aaPredicted RBP22.67■■□□□ 1.22
PTPN4-208ENST00000460289 CDRT15L2A8MXV6 281 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 METTL18O95568 372 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 GDF10P55107 478 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 CCZ1BP86790 482 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 CCZ1P86791 482 aaPredicted RBP22.66■■□□□ 1.22
PTPN4-208ENST00000460289 CCDC173Q0VFZ6 552 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 SPARCL1Q14515 664 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 PTPRCAPQ14761 206 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 PHF19Q5T6S3 580 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 KCTD11Q693B1 232 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 TMPRSS9Q7Z410 1059 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 TRAPPC5Q8IUR0 188 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 ZNF547Q8IVP9 402 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 TRIM58Q8NG06 486 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 OR10G6Q8NH81 332 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 RTP4Q96DX8 246 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 CCDC97Q96F63 343 aaPredicted RBP22.66■■□□□ 1.22
PTPN4-208ENST00000460289 SMOXQ9NWM0 555 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 SLC23A2Q9UGH3 650 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 CHD6Q8TD26 2715 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 LAMA5O15230 3695 aa22.66■■□□□ 1.22
PTPN4-208ENST00000460289 GAPDHSO14556 408 aaPredicted RBP22.65■■□□□ 1.22
PTPN4-208ENST00000460289 LIASO43766 372 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 PRAMEF1O95521 474 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 JMJD7P0C870 316 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 IDSP22304 550 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 HADHAP40939 763 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 PLA2G4EQ3MJ16 856 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 GPRC6AQ5T6X5 926 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 ATG4AQ8WYN0 398 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 NUDT22Q9BRQ3 303 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 SEMA6CQ9H3T2 930 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 CPNE7Q9UBL6 633 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 ZNF148Q9UQR1 794 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 DNAJC16Q9Y2G8 782 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 LOXL2Q9Y4K0 774 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 DNMT3AQ9Y6K1 912 aaPredicted RBP22.65■■□□□ 1.22
PTPN4-208ENST00000460289 CELSR3Q9NYQ7 3312 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 ZFC3H1O60293 1989 aaKnown RBP22.65■■□□□ 1.22
PTPN4-208ENST00000460289 SCN8AQ9UQD0 1980 aa22.65■■□□□ 1.22
PTPN4-208ENST00000460289 PMS2P1A4D2B8 440 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 SRP72O76094 671 aaKnown RBP22.64■■□□□ 1.21
PTPN4-208ENST00000460289 XRCC1P18887 633 aaPredicted RBP22.64■■□□□ 1.21
PTPN4-208ENST00000460289 ITPKBP27987 946 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 PPM1FP49593 454 aaPredicted RBP22.64■■□□□ 1.21
PTPN4-208ENST00000460289 LIMK2P53671 638 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 NFATC2Q13469 925 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 TRA2AQ13595 282 aaKnown RBP eCLIP22.64■■□□□ 1.21
PTPN4-208ENST00000460289 OASLQ15646 514 aaKnown RBP22.64■■□□□ 1.21
PTPN4-208ENST00000460289 NKAIN2Q5VXU1 208 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 ZNF574Q6ZN55 896 aaPredicted RBP22.64■■□□□ 1.21
PTPN4-208ENST00000460289 CLEC14AQ86T13 490 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 LINC00523Q86TU6 105 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 OR4D9Q8NGE8 314 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 ZNF514Q96K75 400 aaPredicted RBP22.64■■□□□ 1.21
PTPN4-208ENST00000460289 DPH1Q9BZG8 443 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 ASB8Q9H765 288 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 FKBPLQ9UIM3 349 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 KCTD3Q9Y597 815 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 PCDHGA7Q9Y5G6 932 aa22.64■■□□□ 1.21
PTPN4-208ENST00000460289 ADAMTS20P59510 1910 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 ERI2A8K979 691 aaKnown RBP22.63■■□□□ 1.21
PTPN4-208ENST00000460289 PDZK1P1A8MUH7 402 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 HGSO14964 777 aaPredicted RBP22.63■■□□□ 1.21
PTPN4-208ENST00000460289 DUX1O43812 170 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 AP2A1O95782 977 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 MSH3P20585 1137 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 EPHA4P54764 986 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 LONRF2Q1L5Z9 754 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 TMEM71Q6P5X7 295 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 ABRAXAS1Q6UWZ7 409 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 WASH2PQ6VEQ5 465 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 C11orf96Q7Z7L8 435 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 AMZ2Q86W34 360 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 RASGEF1AQ8N9B8 481 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 C1orf54Q8WWF1 131 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 KCNE4Q8WWG9 221 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 GRPEL1Q9HAV7 217 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 WASH6PQ9NQA3 447 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 PISDQ9UG56 409 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 PPP2R2CQ9Y2T4 447 aa22.63■■□□□ 1.21
PTPN4-208ENST00000460289 IGHV5-10-1A0A0J9YXX1 117 aa22.62■■□□□ 1.21
PTPN4-208ENST00000460289 PRR19A6NJB7 356 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms