RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 SPATA19Q7Z5L4 167 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 ANKRD46Q86W74 232 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 ANKFN1Q8N957 763 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 BRSK1Q8TDC3 778 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 EEF1AKMT1Q8WVE0 214 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 TFAP2CQ92754 450 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 TMBIM1Q969X1 311 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 BTN2A3PQ96KV6 586 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 UGT2B28Q9BY64 529 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 HIPK3Q9H422 1215 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 NANOGQ9H9S0 305 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 PARVBQ9HBI1 364 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 MAP10Q9P2G4 905 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 PCDHB9Q9Y5E1 797 aa11.77□□□□□ -0.53
MSH6-204ENST00000445503 TARM1B6A8C7 271 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 TMX2-CTNND1H3BSU7 103 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 TRIM24O15164 1050 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 C1RP00736 705 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 CLK1P49759 484 aaKnown RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 RPS24P62847 133 aaKnown RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 TUBA4AP68366 448 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 SEMG2Q02383 582 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 CREB5Q02930 508 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 TBC1D25Q3MII6 688 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 ANKDD1AQ495B1 522 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 MSANTD2Q6P1R3 559 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 AFTPHQ6ULP2 937 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 CARM1Q86X55 608 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 SH3RF2Q8TEC5 729 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 PGAP3Q96FM1 320 aaPredicted RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 ANKRD60Q9BZ19 345 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 A0A0D9SEW6 157 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 ANKRD33BA6NCL7 494 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 HOXB8P17481 243 aaPredicted RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 LPOP22079 712 aaPredicted RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 CDKN1CP49918 316 aaPredicted RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 ZNF157P51786 506 aaPredicted RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 RHOAP61586 193 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 HMGCS1Q01581 520 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 LAPTM4AQ15012 233 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 UPP1Q16831 310 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 RGS21Q2M5E4 152 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 SMYD5Q6GMV2 418 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 SCD5Q86SK9 330 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 ZC3H7AQ8IWR0 971 aaKnown RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 PELI3Q8N2H9 469 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 NUDT8Q8WV74 236 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 TSPAN18Q96SJ8 248 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 AARSD1Q9BTE6 412 aaKnown RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 CPSF4O95639 269 aaKnown RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 UROSP10746 265 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 BMP2P12643 396 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 AKR1A1P14550 325 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 PBX3P40426 434 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 KCNQ1P51787 676 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 TTC23Q5W5X9 447 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 GDF6Q6KF10 455 aaPredicted RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 CRTC3Q6UUV7 619 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 KDELC1Q6UW63 502 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 FAM151BQ6UXP7 276 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 CNTN4Q8IWV2 1026 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 EID3Q8N140 333 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 ATG16L2Q8NAA4 619 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 FEM1CQ96JP0 617 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 ADGRE3Q9BY15 652 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 KLHL25Q9H0H3 589 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 HPS4Q9NQG7 708 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 CNOT11Q9UKZ1 510 aaKnown RBP11.76□□□□□ -0.53
MSH6-204ENST00000445503 VPS9D1Q9Y2B5 631 aa11.76□□□□□ -0.53
MSH6-204ENST00000445503 ATE1O95260 518 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 FTH1P02794 183 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 G6PDP11413 515 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 DUSP4Q13115 394 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 FAM110CQ1W6H9 321 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 THAP5Q7Z6K1 395 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 SYVN1Q86TM6 617 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 ZUFSPQ96AP4 578 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 MAELQ96JY0 434 aaKnown RBP11.75□□□□□ -0.53
MSH6-204ENST00000445503 TFB2MQ9H5Q4 396 aaKnown RBP11.75□□□□□ -0.53
MSH6-204ENST00000445503 IPPKQ9H8X2 491 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 NMRK2Q9NPI5 230 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 PADI4Q9UM07 663 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 TBC1D30Q9Y2I9 924 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 DYTNA2CJ06 578 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 DNAJB1P25685 340 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 GDF5P43026 501 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 CBX3Q13185 183 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 APOFQ13790 326 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 CARTPTQ16568 116 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 MFSD14CQ5VZR4 134 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 UGT3A1Q6NUS8 523 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 HORMAD1Q86X24 394 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 ZCCHC7Q8N3Z6 543 aaKnown RBP11.75□□□□□ -0.53
MSH6-204ENST00000445503 TERB1Q8NA31 727 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 RORBQ92753 470 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 COX4I2Q96KJ9 171 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 DACH2Q96NX9 599 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 TRIM54Q9BYV2 358 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 ASPSCR1Q9BZE9 553 aa11.75□□□□□ -0.53
MSH6-204ENST00000445503 GTF2IRD1Q9UHL9 959 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms