RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 CCDC191Q8NCU4 936 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 TRPC4APQ8TEL6 797 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 WFIKKN2Q8TEU8 576 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 SLC20A1Q8WUM9 679 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 PRPF31Q8WWY3 499 aaKnown RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 SECISBP2LQ93073 1101 aaKnown RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 TMCO6Q96DC7 493 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 RTP4Q96DX8 246 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 CEP295NLQ96MC4 621 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 NUDCD1Q96RS6 583 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 FIZ1Q96SL8 496 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 KIFC3Q9BVG8 833 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 TXLNGYQ9BZA5 131 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 SIL1Q9H173 461 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 IL25Q9H293 177 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 GOLPH3LQ9H4A5 285 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 LRRC4Q9HBW1 653 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.45□□□□□ -1.86
VPS41-207ENST00000439468 NFKBIL1Q9UBC1 381 aaPredicted RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 ICAM5Q9UMF0 924 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 PASKQ96RG2 1323 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 TRIP12Q14669 1992 aaPredicted RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 LOC102723996A0A087X1L8 192 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 hCG_1809904A0A1W2PP81 198 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 A0A1W2PPE2 198 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 A0A1W2PR64 198 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 KANSL1LA0AUZ9 987 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 LNP1A1A4G5 178 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 TMEM8BA6NDV4 472 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 TMEM189-UBE2V1I3L0A0 370 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 ZBTB11O95625 1053 aaPredicted RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 IGHV4-30-4P0DP06 118 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 SRCP12931 536 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 MYOD1P15172 320 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 PRLRP16471 622 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 UGT1A1P22309 533 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 DNASE1P24855 282 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 RAD23BP54727 409 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 SEC61BP60468 96 aaKnown RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 COG7P83436 770 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 PDE1BQ01064 536 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 SLC20A2Q08357 652 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 MAD2L1Q13257 205 aaPredicted RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 UBE2V1Q13404 147 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 RASA2Q15283 850 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 OASLQ15646 514 aaKnown RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 ATP13A5Q4VNC0 1218 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 KRTCAP3Q53RY4 240 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 ARMC3Q5W041 872 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 FRG2Q64ET8 278 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 ADALQ6DHV7 355 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 NAA16Q6N069 864 aaPredicted RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 BRAT1Q6PJG6 821 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 LDB1Q86U70 411 aaPredicted RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 PRPF39Q86UA1 669 aaKnown RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 AVL9Q8NBF6 648 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 UTP15Q8TED0 518 aaKnown RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 FAM216AQ8WUB2 273 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 TANKQ92844 425 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 TAAR8Q969N4 342 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 PTERQ96BW5 349 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 HGH1Q9BTY7 390 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 RAD21L1Q9H4I0 556 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 RETREG1Q9H6L5 497 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 MAGIXQ9H6Y5 334 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 TAS2R14Q9NYV8 317 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 CPSF2Q9P2I0 782 aaKnown RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 KLHL9Q9P2J3 617 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 WDR35Q9P2L0 1181 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 DNAJB4Q9UDY4 337 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 HACL1Q9UJ83 578 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 DBNLQ9UJU6 430 aaKnown RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 FBXL2Q9UKC9 423 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 EXO1Q9UQ84 846 aaKnown RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 TRPV2Q9Y5S1 764 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.44□□□□□ -1.86
VPS41-207ENST00000439468 PRAG1Q86YV5 1406 aa3.44□□□□□ -1.86
VPS41-207ENST00000439468 URADA6NGE7 173 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 GLOD5A6NK44 160 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 ZNF587BE7ETH6 402 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 PLK4O00444 970 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 UBE2CO00762 179 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 MAP2K7O14733 419 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 TCERG1O14776 1098 aaKnown RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 SPRY1O43609 319 aaPredicted RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 DIAPH2O60879 1101 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 ACTN1P12814 892 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 S1PR1P21453 382 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 CLCNKAP51800 687 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 SEC61A1P61619 476 aaKnown RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 CXCL9Q07325 125 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 HYAL1Q12794 435 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 AIMP1Q12904 312 aaKnown RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 COASYQ13057 564 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 SF3B4Q15427 424 aaKnown RBP eCLIP3.43□□□□□ -1.867e-7■■□□□ 13.4
VPS41-207ENST00000439468 MEP1AQ16819 746 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 SYT16Q17RD7 645 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 FAM98BQ52LJ0 330 aaKnown RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 C9orf57Q5W0N0 161 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 ALS2CLQ60I27 953 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms