RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 IL18Q14116 193 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 TEAD4Q15561 434 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 UBXN11Q5T124 520 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 SPATA19Q7Z5L4 167 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 GPR65Q8IYL9 337 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 CEP295NLQ96MC4 621 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 MFSD14AQ96MC6 490 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 IL12RB2Q99665 862 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 TPK1Q9H3S4 243 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 ING4Q9UNL4 249 aa15.29■□□□□ 0.04
PTPRF-206ENST00000429895 SAMD4AQ9UPU9 718 aaKnown RBP15.29■□□□□ 0.04
PTPRF-206ENST00000429895 ZNF879B4DU55 563 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 SEPT4O43236 478 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 ANXA4P09525 319 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-206ENST00000429895 MAGP20916 626 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 MPP1Q00013 466 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 CLEC6AQ6EIG7 209 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 HMCESQ96FZ2 354 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 CPXM1Q96SM3 734 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 ACSS3Q9H6R3 686 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 PLEKHA1Q9HB21 404 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 CHRAC1Q9NRG0 131 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 ERVK-11Q9UQG0 969 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 ARHGEF33A8MVX0 844 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 KLRC4O43908 158 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 EFNA1P20827 205 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-206ENST00000429895 MAPK12P53778 367 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 AIF1P55008 147 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 TRAP1Q12931 704 aaKnown RBP15.28■□□□□ 0.04
PTPRF-206ENST00000429895 PTPN20Q4JDL3 420 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 TEX44Q53QW1 395 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 RBM44Q6ZP01 1051 aaKnown RBP15.28■□□□□ 0.04
PTPRF-206ENST00000429895 PER2O15055 1255 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 CLDN9O95484 217 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 ADRA1BP35368 520 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 CEBPGP53567 150 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 SEMG2Q02383 582 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 INTS6LQ5JSJ4 861 aaKnown RBP15.28■□□□□ 0.04
PTPRF-206ENST00000429895 SH3RF1Q7Z6J0 888 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 KCT2Q8NC54 265 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 RHOJQ9H4E5 214 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 MTRRQ9UBK8 725 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 MAGEL2Q9UJ55 1249 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 TFECO14948 347 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-206ENST00000429895 RGS8P57771 180 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-206ENST00000429895 CAP1Q01518 475 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 FUT10Q6P4F1 479 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 PRSS55Q6UWB4 352 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-206ENST00000429895 TWIST2Q8WVJ9 160 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 TDRD1Q9BXT4 1180 aaKnown RBP15.28■□□□□ 0.04
PTPRF-206ENST00000429895 IPPKQ9H8X2 491 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 TRPS1Q9UHF7 1281 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 ERVW-1Q9UQF0 538 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 MFHAS1Q9Y4C4 1052 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 FRMPD1Q5SYB0 1578 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 C9JVG2 144 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 RAB25P57735 213 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 TBC1D25Q3MII6 688 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 SNX33Q8WV41 574 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 CCDC177Q9NQR7 707 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-206ENST00000429895 COL1A2P08123 1366 aa15.28■□□□□ 0.04
PTPRF-206ENST00000429895 GNB5O14775 395 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 RPIAP49247 311 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 SLC13A2Q13183 592 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 MED27Q6P2C8 311 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 VSTM1Q6UX27 236 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 TMPRSS11AQ6ZMR5 421 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 FAM83DQ9H4H8 585 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 GTF2IRD1Q9UHL9 959 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 PRR5-ARHGAP8B1AHC4 643 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 AP2A2O94973 939 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 ARHGAP8P85298 464 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 SMARCB1Q12824 385 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 ARHGAP22Q7Z5H3 698 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 KLRG1Q96E93 195 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.27■□□□□ 0.04
PTPRF-206ENST00000429895 A0A1W2PRG6 482 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 AHCYL1O43865 530 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 HOXA10P31260 410 aaPredicted RBP15.27■□□□□ 0.04
PTPRF-206ENST00000429895 KIR3DL1P43629 444 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 DCTN2Q13561 401 aaKnown RBP15.27■□□□□ 0.04
PTPRF-206ENST00000429895 SIM2Q14190 667 aaPredicted RBP15.27■□□□□ 0.04
PTPRF-206ENST00000429895 SLC8B1Q6J4K2 584 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 FUKQ8N0W3 1084 aa15.27■□□□□ 0.04
PTPRF-206ENST00000429895 SIDT2Q8NBJ9 832 aaKnown RBP15.27■□□□□ 0.04
PTPRF-206ENST00000429895 CLUHO75153 1309 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 TPD52L2O43399 206 aaKnown RBP15.27■□□□□ 0.03
PTPRF-206ENST00000429895 GSTT1P30711 240 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 PPIGQ13427 754 aaKnown RBP eCLIP15.27■□□□□ 0.032e-7■■□□□ 12.2
PTPRF-206ENST00000429895 GLYATQ6IB77 296 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 CRYBG2Q8N1P7 616 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 MEIOBQ8N635 442 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 SPATA22Q8NHS9 363 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 TBATAQ96M53 351 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 COPS7AQ9UBW8 275 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 RIMS1Q86UR5 1692 aaKnown RBP15.27■□□□□ 0.03
PTPRF-206ENST00000429895 DDX3YO15523 660 aaKnown RBP15.27■□□□□ 0.03
PTPRF-206ENST00000429895 PTPN2P17706 415 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 GPD2P43304 727 aa15.27■□□□□ 0.03
PTPRF-206ENST00000429895 GTF2H2Q13888 395 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms