RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 HDAC10Q969S8 669 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 TRIM56Q9BRZ2 755 aaKnown RBP12.32□□□□□ -0.44
SKA1-203ENST00000417656 BOCQ9BWV1 1114 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 TAAR2Q9P1P5 351 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 RIMKLBQ9ULI2 386 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 SOX13Q9UN79 622 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 MRFAP1Q9Y605 127 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 PCNX2A6NKB5 2137 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 TRBV5-4A0A0C4DH59 114 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 OR2AG2A6NM03 316 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 AGAP14A8MT82 685 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 EFCAB8A8MWE9 144 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 TUBB4AP04350 444 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 CKMT2P17540 419 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 ACRV1P26436 265 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 MAGEA3P43357 314 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 PRAMEP78395 509 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 B4GALNT1Q00973 533 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 NR0B2Q15466 257 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 SMAD1Q15797 465 aaKnown RBP12.31□□□□□ -0.44
SKA1-203ENST00000417656 DBN1Q16643 649 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 INSCQ1MX18 579 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 GPR33Q49SQ1 333 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 N4BP2L1Q5TBK1 243 aaPredicted RBP12.31□□□□□ -0.44
SKA1-203ENST00000417656 CASC4Q6P4E1 433 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 GUSBP11Q6P575 273 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 LVRNQ6Q4G3 990 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 CES3Q6UWW8 571 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 TAS2R42Q7RTR8 314 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 SLCO6A1Q86UG4 719 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 HOOK3Q86VS8 718 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 SERPINA9Q86WD7 417 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 ZNF547Q8IVP9 402 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 SDR16C5Q8N3Y7 309 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 PNPLA1Q8N8W4 532 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 SCG3Q8WXD2 468 aaKnown RBP12.31□□□□□ -0.44
SKA1-203ENST00000417656 PEX13Q92968 403 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 MFSD3Q96ES6 412 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 SNF8Q96H20 258 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 TTC25Q96NG3 672 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 COPS8Q99627 209 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 KIFC1Q9BW19 673 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 DPEP2Q9H4A9 486 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 MRM3Q9HC36 420 aaKnown RBP12.31□□□□□ -0.44
SKA1-203ENST00000417656 TREX1Q9NSU2 369 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 SPATS2LQ9NUQ6 558 aaKnown RBP12.31□□□□□ -0.44
SKA1-203ENST00000417656 GULP1Q9UBP9 304 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 DNAJC16Q9Y2G8 782 aa12.31□□□□□ -0.44
SKA1-203ENST00000417656 CACNA1AO00555 2505 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 FAM187AA6NFU0 413 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 KMOO15229 486 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 NOBOXO60393 691 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 BANF1O75531 89 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 RFPL3O75679 317 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 SEC31AO94979 1220 aaKnown RBP12.3□□□□□ -0.44
SKA1-203ENST00000417656 CKMT1AP12532 417 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 ACP1P24666 158 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 PBLDP30039 288 aaPredicted RBP12.3□□□□□ -0.44
SKA1-203ENST00000417656 RPL21P46778 160 aaKnown RBP12.3□□□□□ -0.44
SKA1-203ENST00000417656 ITGA8P53708 1063 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 EMP3P54852 163 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 MAZP56270 477 aaKnown RBP12.3□□□□□ -0.44
SKA1-203ENST00000417656 SEMA3AQ14563 771 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 MORF4L2Q15014 288 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 FNBP1LQ5T0N5 605 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 EFL1Q7Z2Z2 1120 aaKnown RBP12.3□□□□□ -0.44
SKA1-203ENST00000417656 C11orf96Q7Z7L8 435 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 PCGF5Q86SE9 256 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 BEND7Q8N7W2 519 aaPredicted RBP12.3□□□□□ -0.44
SKA1-203ENST00000417656 OR6P1Q8NGX9 317 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 ZDHHC1Q8WTX9 485 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 PATE1Q8WXA2 126 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.3□□□□□ -0.44
SKA1-203ENST00000417656 ZNF669Q96BR6 464 aaPredicted RBP12.3□□□□□ -0.44
SKA1-203ENST00000417656 DCUN1D1Q96GG9 259 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 PWWP2AQ96N64 755 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 TIMM29Q9BSF4 260 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 DPH5Q9H2P9 285 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 OSGEPL1Q9H4B0 414 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 KLC4Q9NSK0 619 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 EVA1BQ9NVM1 165 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 ZDHHC3Q9NYG2 299 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 SAMD15Q9P1V8 674 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 MARCH4Q9P2E8 410 aaPredicted RBP12.3□□□□□ -0.44
SKA1-203ENST00000417656 SLC23A2Q9UGH3 650 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 APOBEC2Q9Y235 224 aaKnown RBP12.3□□□□□ -0.44
SKA1-203ENST00000417656 SNX24Q9Y343 169 aa12.3□□□□□ -0.44
SKA1-203ENST00000417656 ARHGEF17Q96PE2 2063 aaPredicted RBP12.3□□□□□ -0.44
SKA1-203ENST00000417656 IGLV3-16A0A075B6K0 115 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 MED19A0JLT2 244 aaPredicted RBP12.29□□□□□ -0.44
SKA1-203ENST00000417656 CPED1A4D0V7 1026 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 SDR42E2A6NKP2 422 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 CFAP99D6REC4 459 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 SGTAO43765 313 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 SNX2O60749 519 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 DKK1O94907 266 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 EML2O95834 649 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 RALBP11234 206 aa12.29□□□□□ -0.44
SKA1-203ENST00000417656 ZNF7P17097 686 aaPredicted RBP12.29□□□□□ -0.44
SKA1-203ENST00000417656 ARNTP27540 789 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms