RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LRRC49Q8IUZ0 686 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 CPSF7Q8N684 471 aaKnown RBP13.25□□□□□ -0.29
VPS54-203ENST00000409558 EFHD1Q9BUP0 239 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 GPBP1L1Q9HC44 474 aaPredicted RBP13.25□□□□□ -0.29
VPS54-203ENST00000409558 CMTM6Q9NX76 183 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 CASP8AP2Q9UKL3 1982 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.25□□□□□ -0.29
VPS54-203ENST00000409558 DHRS12A0PJE2 317 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 TRIM24O15164 1050 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 GPX3P22352 226 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 CASP9P55211 416 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 DNAJB13P59910 316 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 LAPTM4AQ15012 233 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 ZNF648Q5T619 568 aaPredicted RBP13.25□□□□□ -0.29
VPS54-203ENST00000409558 ZNF697Q5TEC3 545 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 LETMD1Q6P1Q0 360 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 AFTPHQ6ULP2 937 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 DNAJB7Q7Z6W7 309 aaPredicted RBP13.25□□□□□ -0.29
VPS54-203ENST00000409558 SLCO4A1Q96BD0 722 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 FAR2Q96K12 515 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 PLEKHG4BQ96PX9 1271 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 PSKH2Q96QS6 385 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 ADGRE3Q9BY15 652 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.25□□□□□ -0.29
VPS54-203ENST00000409558 MED16Q9Y2X0 877 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 PRSS21Q9Y6M0 314 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 EYSQ5T1H1 3165 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 MYOFQ9NZM1 2061 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 ARVCFO00192 962 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 CYBBP04839 570 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 G6PDP11413 515 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 GABRR2P28476 465 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 LIPEQ05469 1076 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 IMPG1Q17R60 797 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 GPRIN3Q6ZVF9 776 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 CHSY3Q70JA7 882 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 SERPINA9Q86WD7 417 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 CAPNS2Q96L46 248 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 RNF208Q9H0X6 261 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 VPS51Q9UID3 782 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 ZNF225Q9UK10 706 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 PRUNE2Q8WUY3 3088 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 CTSOP43234 321 aaPredicted RBP13.25□□□□□ -0.29
VPS54-203ENST00000409558 CBLBQ13191 982 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 RBBP5Q15291 538 aaKnown RBP13.25□□□□□ -0.29
VPS54-203ENST00000409558 TGFBIQ15582 683 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 SF1Q15637 639 aaKnown RBP13.25□□□□□ -0.29
VPS54-203ENST00000409558 ATP6AP1LQ52LC2 224 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 CTSL3PQ5NE16 218 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 FAM126BQ8IXS8 530 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 METTL25Q8N6Q8 603 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 PDZD8Q8NEN9 1154 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 LRRC58Q96CX6 371 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 ZNF385DQ9H6B1 395 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 IPPKQ9H8X2 491 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 ZDHHC4Q9NPG8 344 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 EXD2Q9NVH0 621 aa13.25□□□□□ -0.29
VPS54-203ENST00000409558 ZBBXA8MT70 800 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 ZXDBP98169 803 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 VEPH1Q14D04 833 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 USP41Q3LFD5 358 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 UGT3A2Q3SY77 523 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 ADGRF1Q5T601 910 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 HMBOX1Q6NT76 420 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 NPAS4Q8IUM7 802 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 CMTM8Q8IZV2 173 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 EID2BQ96D98 161 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 MRM3Q9HC36 420 aaKnown RBP13.24□□□□□ -0.29
VPS54-203ENST00000409558 ASB3Q9Y575 518 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 S100BP04271 92 aaPredicted RBP13.24□□□□□ -0.29
VPS54-203ENST00000409558 CDH4P55283 916 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 TPD52P55327 224 aaPredicted RBP13.24□□□□□ -0.29
VPS54-203ENST00000409558 ERVPABLB-1P60509 514 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 IKBKEQ14164 716 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 GPNMBQ14956 572 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 SETMARQ53H47 684 aaPredicted RBP13.24□□□□□ -0.29
VPS54-203ENST00000409558 TRAF7Q6Q0C0 670 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 GALNT10Q86SR1 603 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 MAELQ96JY0 434 aaKnown RBP13.24□□□□□ -0.29
VPS54-203ENST00000409558 CLSTN3Q9BQT9 956 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 MAGEH1Q9H213 219 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 OCEL1Q9H607 264 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 CREBZFQ9NS37 354 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 A0A1W2PRU2 124 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 TYW5A2RUC4 315 aaKnown RBP13.24□□□□□ -0.29
VPS54-203ENST00000409558 DRGXA6NNA5 263 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 RHDQ02161 417 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 PHKG1Q16816 387 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 AP5B1Q2VPB7 878 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 MYLK3Q32MK0 819 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 PHACTR4Q8IZ21 702 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 FOXJ1Q92949 421 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 BIRC8Q96P09 236 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 PPP1R2P1Q96PQ5 205 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 ATG10Q9H0Y0 220 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 YIPF1Q9Y548 306 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 MIA3Q5JRA6 1907 aa13.24□□□□□ -0.29
VPS54-203ENST00000409558 RALGAPA2Q2PPJ7 1873 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 A0A1B0GVM2 712 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 EI24O14681 340 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms