RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 ADAM23O75077 832 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 MTX2O75431 263 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 TRIM16O95361 564 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 NTSR1P30989 418 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 SKIV2L2P42285 1042 aaKnown RBP13.9□□□□□ -0.18
GPNMB-203ENST00000409458 COPAP53621 1224 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 PRKAA2P54646 552 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 AGBL4Q5VU57 503 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 CYP2U1Q7Z449 544 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 CRLF3Q8IUI8 442 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 PELI3Q8N2H9 469 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 IL17RCQ8NAC3 791 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 OR2T3Q8NH03 318 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 EEF1AKMT1Q8WVE0 214 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 KIAA1191Q96A73 305 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 RAB7BQ96AH8 199 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 AP2M1Q96CW1 435 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 NUS1Q96E22 293 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 RMDN2Q96LZ7 410 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 TMEM237Q96Q45 408 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 ATOH8Q96SQ7 321 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 TRIM55Q9BYV6 548 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 TFB2MQ9H5Q4 396 aaKnown RBP13.9□□□□□ -0.18
GPNMB-203ENST00000409458 CYP4F12Q9HCS2 524 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 MBD1Q9UIS9 605 aaPredicted RBP13.9□□□□□ -0.18
GPNMB-203ENST00000409458 DCTN4Q9UJW0 460 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 PIKFYVEQ9Y2I7 2098 aa13.9□□□□□ -0.18
GPNMB-203ENST00000409458 CDC7O00311 574 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 RNASEH1O60930 286 aaKnown RBP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 RECQL5O94762 991 aaPredicted RBP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 SLC25A14O95258 325 aaPredicted RBP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 KLF8O95600 359 aaPredicted RBP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 ADH1BP00325 375 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 SOD1P00441 154 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 KITP10721 976 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 FOSL2P15408 326 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 COL9A1P20849 921 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 DRD1P21728 446 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 AKT1P31749 480 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 CCR10P46092 362 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 NAGLUP54802 743 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 IL2P60568 153 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 ATP6V0D1P61421 351 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 RPS14P62263 151 aaKnown RBP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 GRSF1Q12849 480 aaKnown RBP eCLIP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 IFT88Q13099 833 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 SMAD2Q15796 467 aaKnown RBP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 KHDC1Q4VXA5 237 aaKnown RBP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 ZNF648Q5T619 568 aaPredicted RBP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 ZNF776Q68DI1 518 aaPredicted RBP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 DET1Q7L5Y6 550 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 DDHD1Q8NEL9 900 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 RHEBL1Q8TAI7 183 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 INPP5DQ92835 1189 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 HLA-CQ95604 372 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 KCNK13Q9HB14 408 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 SERGEFQ9UGK8 458 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 TSR3Q9UJK0 312 aaKnown RBP13.89□□□□□ -0.19
GPNMB-203ENST00000409458 DNAJC16Q9Y2G8 782 aa13.89□□□□□ -0.19
GPNMB-203ENST00000409458 A0A1W2PP55 124 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 A0A1W2PQF6 199 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 SHISA7A6NL88 538 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 F8W8V4 182 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 UBXN8O00124 270 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 BTN3A1O00481 513 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 KERAO60938 352 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 IPO13O94829 963 aaKnown RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 HSPA4LO95757 839 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 HOXB2P14652 356 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 C5AR1P21730 350 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 TAS2R38P59533 333 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 DNAJB13P59910 316 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 RCN2Q14257 317 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 TSNQ15631 228 aaKnown RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 PIWIL4Q7Z3Z4 852 aaKnown RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 RAVER1Q8IY67 606 aaKnown RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 ZBTB2Q8N680 514 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 CXorf40AQ8TE69 158 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 BTN2A2Q8WVV5 523 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 GUCD1Q96NT3 240 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 VPS35Q96QK1 796 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 DRC3Q9H069 523 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 SLC6A17Q9H1V8 727 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 NCKIPSDQ9NZQ3 722 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 A0A0G2JND7 137 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 LZTS3O60299 673 aaPredicted RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 CHRNGP07510 517 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 MTHFD2P13995 350 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 ATP1B2P14415 290 aaPredicted RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 HNRNPH2P55795 449 aaKnown RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 NFKB2Q00653 900 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 CREB5Q02930 508 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 SDE2Q6IQ49 451 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 TRIM67Q6ZTA4 783 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 ZNF765Q7L2R6 523 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 SPATS2Q86XZ4 545 aaKnown RBP13.88□□□□□ -0.19
GPNMB-203ENST00000409458 HDDC3Q8N4P3 179 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 ZNF781Q8N8C0 355 aa13.88□□□□□ -0.19
GPNMB-203ENST00000409458 KCNV2Q8TDN2 545 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms