RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 NAT14Q8WUY8 206 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 SGF29Q96ES7 293 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 CCDC97Q96F63 343 aaPredicted RBP17.86■□□□□ 0.45
SDC1-203ENST00000403076 SLC6A18Q96N87 628 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 NDNQ99608 321 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 MOSPD1Q9UJG1 213 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 PRSS21Q9Y6M0 314 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 E5RI56 91 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 VEGFDO43915 354 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 OPA1O60313 960 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 ESR1P03372 595 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 OR56A5P0C7T3 313 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 KELP23276 732 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 RABIFP47224 123 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 NUBP1P53384 320 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 RASA2Q15283 850 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 RBM20Q5T481 1227 aaKnown RBP17.85■□□□□ 0.45
SDC1-203ENST00000403076 LYSMD4Q5XG99 296 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 Q6ZSR6 202 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 ADGRG6Q86SQ4 1221 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 DCLK2Q8N568 766 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 FAM174AQ8TBP5 190 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 NELL1Q92832 810 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 KLHDC7BQ96G42 594 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 BIRC8Q96P09 236 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 ORAI3Q9BRQ5 295 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 AARSD1Q9BTE6 412 aaKnown RBP17.85■□□□□ 0.45
SDC1-203ENST00000403076 P2RY12Q9H244 342 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 ATXN10Q9UBB4 475 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 COMMD10Q9Y6G5 202 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 GON4LQ3T8J9 2241 aa17.85■□□□□ 0.45
SDC1-203ENST00000403076 A0A0C4DFX4 3053 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 OR2AG2A6NM03 316 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 H3BMM5 538 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 QSOX1O00391 747 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 TOR1BO14657 336 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 RHOBTB1O94844 696 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 AP2A2O94973 939 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 HOXC4P09017 264 aaPredicted RBP17.84■□□□□ 0.45
SDC1-203ENST00000403076 THEGLP0DJG4 465 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 CHRM3P20309 590 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 CD38P28907 300 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 POLD2P49005 469 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 ADARP55265 1226 aaKnown RBP17.84■□□□□ 0.45
SDC1-203ENST00000403076 KIAA1024LP59773 190 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 PFN3P60673 137 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 RACK1P63244 317 aaKnown RBP17.84■□□□□ 0.45
SDC1-203ENST00000403076 USP10Q14694 798 aaKnown RBP17.84■□□□□ 0.45
SDC1-203ENST00000403076 PLK5Q496M5 336 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 HECTD2Q5U5R9 776 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 PMS2CLQ68D20 193 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 FAM45BPQ6NSW5 357 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 ZNF549Q6P9A3 640 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 TMEM220Q6QAJ8 160 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 ENPP7Q6UWV6 458 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 ABI3BPQ7Z7G0 1075 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 CNPY4Q8N129 248 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 RASGEF1AQ8N9B8 481 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 OR13H1Q8NG92 308 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 FAM45AQ8TCE6 357 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 MTBPQ96DY7 904 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 WDR92Q96MX6 357 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 GPR22Q99680 433 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 MCMBPQ9BTE3 642 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 LGALS13Q9UHV8 139 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 VWA7Q9Y334 891 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 PCDHGA2Q9Y5H1 932 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 PLXNB3Q9ULL4 1909 aa17.84■□□□□ 0.45
SDC1-203ENST00000403076 VPS26AO75436 327 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 TRIM16O95361 564 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 MT-ND3P03897 115 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 ZNF8P17098 575 aaPredicted RBP17.83■□□□□ 0.45
SDC1-203ENST00000403076 ITGB6P18564 788 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 POU4F1Q01851 419 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 SIM2Q14190 667 aaPredicted RBP17.83■□□□□ 0.45
SDC1-203ENST00000403076 NFATC4Q14934 902 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 CTSL3PQ5NE16 218 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 PRR23BQ6ZRT6 265 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 TRAPPC5Q8IUR0 188 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 CYP4X1Q8N118 509 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 ZBTB44Q8NCP5 570 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 DNASE2BQ8WZ79 361 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 FAM136AQ96C01 138 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 TSPAN17Q96FV3 270 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 ZNF514Q96K75 400 aaPredicted RBP17.83■□□□□ 0.45
SDC1-203ENST00000403076 PKNOX2Q96KN3 472 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 TSSK1BQ9BXA7 367 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 CAB39LQ9H9S4 337 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 TM9SF3Q9HD45 589 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 SARS2Q9NP81 518 aaKnown RBP17.83■□□□□ 0.45
SDC1-203ENST00000403076 SLCO1B1Q9Y6L6 691 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 THADAQ6YHU6 1953 aa17.83■□□□□ 0.45
SDC1-203ENST00000403076 TMEM202A6NGA9 273 aa17.82■□□□□ 0.44
SDC1-203ENST00000403076 AGPSO00116 658 aa17.82■□□□□ 0.44
SDC1-203ENST00000403076 NIPSNAP2O75323 286 aa17.82■□□□□ 0.44
SDC1-203ENST00000403076 ITPKAP23677 461 aa17.82■□□□□ 0.44
SDC1-203ENST00000403076 TYK2P29597 1187 aa17.82■□□□□ 0.44
SDC1-203ENST00000403076 CTSCP53634 463 aa17.82■□□□□ 0.44
SDC1-203ENST00000403076 PTK2BQ14289 1009 aa17.82■□□□□ 0.44
SDC1-203ENST00000403076 MACC1Q6ZN28 852 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms