RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PXNP49023 591 aaPredicted RBP14.06□□□□□ -0.16
SKA1-202ENST00000398452 CCR5P51681 352 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 KPNA2P52292 529 aaKnown RBP14.06□□□□□ -0.16
SKA1-202ENST00000398452 ADARP55265 1226 aaKnown RBP14.06□□□□□ -0.16
SKA1-202ENST00000398452 IRF4Q15306 451 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 TMEM259Q4ZIN3 620 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 ADAMTSL4Q6UY14 1074 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 TIFABQ6ZNK6 161 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 TRABD2AQ86V40 505 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 SLC41A1Q8IVJ1 513 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 DDHD1Q8NEL9 900 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 HIC2Q96JB3 615 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 NDNQ99608 321 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 SELENOSQ9BQE4 189 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 AARSD1Q9BTE6 412 aaKnown RBP14.06□□□□□ -0.16
SKA1-202ENST00000398452 PCED1AQ9H1Q7 454 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 VPS11Q9H270 941 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 SYTL2Q9HCH5 934 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 C2orf42Q9NWW7 574 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 PLA2G2EQ9NZK7 142 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 TRMT6Q9UJA5 497 aaKnown RBP14.06□□□□□ -0.16
SKA1-202ENST00000398452 ZFR2Q9UPR6 939 aaKnown RBP14.06□□□□□ -0.16
SKA1-202ENST00000398452 DMTF1Q9Y222 760 aa14.06□□□□□ -0.16
SKA1-202ENST00000398452 A0A087X1B8 175 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 IGHV1OR15-9A0A0B4J2B8 117 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 CCDC163A0A0D9SF12 145 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 MEI4A8MW99 385 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 COPEO14579 308 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 GPR39O43194 453 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 FTH1P02794 183 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 F7P08709 466 aaPredicted RBP14.05□□□□□ -0.16
SKA1-202ENST00000398452 ATP1B2P14415 290 aaPredicted RBP14.05□□□□□ -0.16
SKA1-202ENST00000398452 BRAFP15056 766 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 KELP23276 732 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 HTR1BP28222 390 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 GABRB3P28472 473 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 HPDP32754 393 aaPredicted RBP14.05□□□□□ -0.16
SKA1-202ENST00000398452 SKIV2L2P42285 1042 aaKnown RBP14.05□□□□□ -0.16
SKA1-202ENST00000398452 RAB10P61026 200 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 PPP2CBP62714 309 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 PPP2CAP67775 309 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 WSCD2Q2TBF2 565 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 TTLL9Q3SXZ7 439 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 TTMPQ5BVD1 217 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 TBC1D1Q86TI0 1168 aaPredicted RBP14.05□□□□□ -0.16
SKA1-202ENST00000398452 C11orf74Q86VG3 221 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 HEATR4Q86WZ0 1026 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 CYP4X1Q8N118 509 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 RLN3Q8WXF3 142 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 ZNF514Q96K75 400 aaPredicted RBP14.05□□□□□ -0.16
SKA1-202ENST00000398452 GPAMQ9HCL2 828 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 TRIM39Q9HCM9 518 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 SARS2Q9NP81 518 aaKnown RBP14.05□□□□□ -0.16
SKA1-202ENST00000398452 CD93Q9NPY3 652 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 SNX15Q9NRS6 342 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 PCMTD2Q9NV79 361 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 EURLQ9NYK6 297 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 NKIRAS1Q9NYS0 192 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 SMG5Q9UPR3 1016 aaKnown RBP14.05□□□□□ -0.16
SKA1-202ENST00000398452 ANKRD6Q9Y2G4 727 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 SPTBN4Q9H254 2564 aa14.05□□□□□ -0.16
SKA1-202ENST00000398452 A0A096LPK6 155 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 FADS2P1A8MWK0 482 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 PRAMEF26H0Y7S4 382 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 GOLGA8RI6L899 631 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 KPNA5O15131 536 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 VEGFDO43915 354 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 OR1I1O60431 355 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 MAGEC1O60732 1142 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 CDK14O94921 469 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 TRIM16O95361 564 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 SP9P0CG40 484 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 GM2AP17900 193 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 OAS2P29728 719 aaKnown RBP14.04□□□□□ -0.16
SKA1-202ENST00000398452 RPL6Q02878 288 aaKnown RBP14.04□□□□□ -0.16
SKA1-202ENST00000398452 TMEM115Q12893 351 aaPredicted RBP14.04□□□□□ -0.16
SKA1-202ENST00000398452 INPP5AQ14642 412 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 ZNF789Q5FWF6 425 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 KLC3Q6P597 504 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 DET1Q7L5Y6 550 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 C1orf210Q8IVY1 113 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 C4orf33Q8N1A6 199 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 TP53I13Q8NBR0 393 aaPredicted RBP14.04□□□□□ -0.16
SKA1-202ENST00000398452 FAM76AQ8TAV0 307 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 KCNJ9Q92806 393 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 FOXJ1Q92949 421 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 TLCD1Q96CP7 247 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 LENG8Q96PV6 779 aaPredicted RBP14.04□□□□□ -0.16
SKA1-202ENST00000398452 KLF6Q99612 283 aaPredicted RBP14.04□□□□□ -0.16
SKA1-202ENST00000398452 MYOCQ99972 504 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 C6orf106Q9H6K1 298 aaPredicted RBP14.04□□□□□ -0.16
SKA1-202ENST00000398452 POPDC3Q9HBV1 291 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 ACOT9Q9Y305 439 aa14.04□□□□□ -0.16
SKA1-202ENST00000398452 USP34Q70CQ2 3546 aa14.03□□□□□ -0.16
SKA1-202ENST00000398452 A0A1W2PPM1 405 aa14.03□□□□□ -0.16
SKA1-202ENST00000398452 TOR1BO14657 336 aa14.03□□□□□ -0.16
SKA1-202ENST00000398452 GLRA3O75311 464 aa14.03□□□□□ -0.16
SKA1-202ENST00000398452 MYCLP1P12525 358 aaPredicted RBP14.03□□□□□ -0.16
SKA1-202ENST00000398452 HOXA6P31267 233 aa14.03□□□□□ -0.16
SKA1-202ENST00000398452 RGS4P49798 205 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms