RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TXNDC11Q6PKC3 985 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 CCNJLQ8IV13 435 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 WDR75Q8IWA0 830 aaKnown RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 CPNE9Q8IYJ1 553 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 UMODL1-AS1Q8N2C9 162 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 Q8N9G6 341 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 DRAXINQ8NBI3 349 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 MCOLN3Q8TDD5 553 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 NUS1Q96E22 293 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 LINGO1Q96FE5 620 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 HSPA12BQ96MM6 686 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 PSKH2Q96QS6 385 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 TTLL2Q9BWV7 592 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 FBRSL1Q9HCM7 1045 aaKnown RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 ARL8BQ9NVJ2 186 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 STX18Q9P2W9 335 aaKnown RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 GRID1Q9ULK0 1009 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 SVILO95425 2214 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 TRIP11Q15643 1979 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 A0A1W2PPM1 405 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 GNSP15586 552 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 AKT2P31751 481 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 TTPAP49638 278 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 SLC18A1P54219 525 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 AP2B1P63010 937 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 CDK16Q00536 496 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 STX3Q13277 289 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 DPYSQ14117 519 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 PDE1CQ14123 709 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 PAFAH1B3Q15102 231 aaKnown RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 MSS51Q4VC12 460 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 ACSBG2Q5FVE4 666 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 SPANXN3Q5MJ09 141 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 ACBD5Q5T8D3 534 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 OR52E8Q6IFG1 317 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 AFTPHQ6ULP2 937 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 FAM81AQ8TBF8 368 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 PYCR2Q96C36 320 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 TOE1Q96GM8 510 aaKnown RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 MYRFLQ96LU7 910 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 LENG8Q96PV6 779 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 PANX3Q96QZ0 392 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 IGSF9Q9P2J2 1179 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 DOCK8Q8NF50 2099 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 LOC100653049A0A140TA62 436 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 ARHGAP10A1A4S6 786 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 H3BM21 787 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 GMNNO75496 209 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 GCATO75600 419 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 KRT34O76011 436 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 VIPP01282 170 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 NAGLUP54802 743 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 ATG16L1Q676U5 607 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 TDRPQ86YL5 185 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 DENND1AQ8TEH3 1009 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 NR1H4Q96RI1 486 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 SYTL2Q9HCH5 934 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 MID2Q9UJV3 735 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 B2RBV5 119 aa10.21□□□□□ -0.77
COL6A3-205ENST00000392004 SMAPO00193 183 aa10.21□□□□□ -0.77
COL6A3-205ENST00000392004 AURKAO14965 403 aa10.21□□□□□ -0.77
COL6A3-205ENST00000392004 PREPP48147 710 aa10.21□□□□□ -0.77
COL6A3-205ENST00000392004 SMAD4Q13485 552 aaKnown RBP10.21□□□□□ -0.77
COL6A3-205ENST00000392004 RNASEH2BQ5TBB1 312 aaKnown RBP10.21□□□□□ -0.77
COL6A3-205ENST00000392004 BRSK1Q8TDC3 778 aa10.21□□□□□ -0.77
COL6A3-205ENST00000392004 LMX1AQ8TE12 382 aa10.21□□□□□ -0.77
COL6A3-205ENST00000392004 CDKN2AIPNLQ96HQ2 116 aa10.21□□□□□ -0.77
COL6A3-205ENST00000392004 MAGED4Q96JG8 741 aa10.21□□□□□ -0.77
COL6A3-205ENST00000392004 FCRL5Q96RD9 977 aa10.21□□□□□ -0.77
COL6A3-205ENST00000392004 PSME4Q14997 1843 aa10.21□□□□□ -0.77
COL6A3-205ENST00000392004 RPP40O75818 363 aaKnown RBP10.21□□□□□ -0.78
COL6A3-205ENST00000392004 ZNF189O75820 626 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-205ENST00000392004 SERPINB3P29508 390 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 SERPINB8P50452 374 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 NFATC2Q13469 925 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 TSTD2Q5T7W7 516 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 RFLNAQ6ZTI6 216 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 USP53Q70EK8 1073 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 TCP10LQ8TDR4 215 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 IL1RL2Q9HB29 575 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 VWA7Q9Y334 891 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 TCAF1Q9Y4C2 921 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 IRAK3Q9Y616 596 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 PTPRFP10586 1907 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 ABCA7Q8IZY2 2146 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 PLXNA1Q9UIW2 1896 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 MBTPS2O43462 519 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 CATP04040 527 aaKnown RBP10.21□□□□□ -0.78
COL6A3-205ENST00000392004 CLCNKAP51800 687 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 MLF2Q15773 248 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-205ENST00000392004 CPSF6Q16630 551 aaKnown RBP eCLIP10.21□□□□□ -0.78
COL6A3-205ENST00000392004 ZNF805Q5CZA5 627 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 SH2D4BQ5SQS7 431 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 IZUMO2Q6UXV1 221 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 HEATR4Q86WZ0 1026 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 ITFG2Q969R8 447 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 SLC39A13Q96H72 371 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 TMEM120AQ9BXJ8 343 aa10.21□□□□□ -0.78
COL6A3-205ENST00000392004 OR1I1O60431 355 aa10.2□□□□□ -0.78
COL6A3-205ENST00000392004 CPA2P48052 419 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms