RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 ABHD8Q96I13 439 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 HOPXQ9BPY8 73 aaPredicted RBP13.08□□□□□ -0.32
NPHP4-203ENST00000378169 TMCO1Q9UM00 188 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 DUSP12Q9UNI6 340 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 XIRP1Q702N8 1843 aaKnown RBP13.08□□□□□ -0.32
NPHP4-203ENST00000378169 ILVBLA1L0T0 632 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 ANKRD66B4E2M5 251 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 CDC7O00311 574 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 NPHS1O60500 1241 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 ANXA6P08133 673 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 DLDP09622 509 aaKnown RBP13.08□□□□□ -0.32
NPHP4-203ENST00000378169 SLC35G4P0C7Q5 338 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 NCK1P16333 377 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 GKP32189 559 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 GTF2H2Q13888 395 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 UBXN11Q5T124 520 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 REP15Q6BDI9 236 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 GTF2H2CQ6P1K8 395 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 CYP4Z1Q86W10 505 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 CFAP206Q8IYR0 622 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 C10orf53Q8N6V4 93 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 MIEF2Q96C03 454 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 OXCT2Q9BYC2 517 aaPredicted RBP13.08□□□□□ -0.32
NPHP4-203ENST00000378169 TXLNGYQ9BZA5 131 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 SMG9Q9H0W8 520 aaKnown RBP13.08□□□□□ -0.32
NPHP4-203ENST00000378169 CREBZFQ9NS37 354 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 USE1Q9NZ43 259 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 STK39Q9UEW8 545 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 PRKAG3Q9UGI9 489 aa13.08□□□□□ -0.32
NPHP4-203ENST00000378169 MBLAC1A4D2B0 266 aaPredicted RBP13.07□□□□□ -0.32
NPHP4-203ENST00000378169 QSOX1O00391 747 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 RPS7P62081 194 aaKnown RBP13.07□□□□□ -0.32
NPHP4-203ENST00000378169 C17orf99Q6UX52 265 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 C3orf58Q8NDZ4 430 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 ZFRQ96KR1 1074 aaKnown RBP13.07□□□□□ -0.32
NPHP4-203ENST00000378169 UNC93B1Q9H1C4 597 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 MFSD1Q9H3U5 465 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 ADGRE2Q9UHX3 823 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 CNOT3O75175 753 aaKnown RBP13.07□□□□□ -0.32
NPHP4-203ENST00000378169 LIPEQ05469 1076 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 RORBQ92753 470 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 IGSF8Q969P0 613 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 PAIP1Q9H074 479 aaKnown RBP13.07□□□□□ -0.32
NPHP4-203ENST00000378169 EPB41L4BQ9H329 900 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 DDX28Q9NUL7 540 aaKnown RBP13.07□□□□□ -0.32
NPHP4-203ENST00000378169 DNAJC11Q9NVH1 559 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 ATAD3AQ9NVI7 634 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 GIMAP2Q9UG22 337 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 RP1L1Q8IWN7 2480 aaPredicted RBP13.07□□□□□ -0.32
NPHP4-203ENST00000378169 FAM220BPB1ANY3 271 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 SGTAO43765 313 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 EFCAB14O75071 495 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 PFKMP08237 780 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 UROSP10746 265 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 UQCRBP14927 111 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 NAA20P61599 178 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 HMGCS1Q01581 520 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 TGM3Q08188 693 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 CHIT1Q13231 466 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 C6orf52Q5T4I8 152 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 MBLAC2Q68D91 279 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 C8orf59Q8N0T1 100 aaPredicted RBP13.07□□□□□ -0.32
NPHP4-203ENST00000378169 KIFC1Q9BW19 673 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 POLR1BQ9H9Y6 1135 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 SGK2Q9HBY8 427 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 NKX1-2Q9UD57 310 aaPredicted RBP13.07□□□□□ -0.32
NPHP4-203ENST00000378169 RGS17Q9UGC6 210 aaPredicted RBP13.07□□□□□ -0.32
NPHP4-203ENST00000378169 VPS51Q9UID3 782 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 NENFQ9UMX5 172 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 NCKAP1Q9Y2A7 1128 aa13.07□□□□□ -0.32
NPHP4-203ENST00000378169 TRBV23OR9-2A0A075B6M9 112 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 ISM1B1AKI9 464 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 GSTT1P30711 240 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 KIR3DL1P43629 444 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 SFSWAPQ12872 951 aaKnown RBP13.06□□□□□ -0.32
NPHP4-203ENST00000378169 NUMA1Q14980 2115 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 C16orf72Q14CZ0 275 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 CYP20A1Q6UW02 462 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 KRT78Q8N1N4 520 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 ACDQ96AP0 544 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 ZFYVE19Q96K21 471 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 SIRPGQ9P1W8 387 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 CORO1CQ9ULV4 474 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-203ENST00000378169 ANKRD36CQ5JPF3 1778 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 F5P12259 2224 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TBC1D3DA0A087WVF3 549 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TBC1D3IA0A087WXS9 549 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TBC1D3EA0A087X179 549 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TBC1D3KA0A087X1G2 549 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TBC1D3FA6NER0 549 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TBC1D3LB9A6J9 549 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 KLF11O14901 512 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 FFAR2O15552 330 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 CLDN7O95471 211 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 CLDN9O95484 217 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TBC1D3HP0C7X1 549 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TRIM25Q14258 630 aaKnown RBP13.06□□□□□ -0.32
NPHP4-203ENST00000378169 CCDC157Q569K6 752 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 RNF220Q5VTB9 566 aa13.06□□□□□ -0.32
NPHP4-203ENST00000378169 TPGS2Q68CL5 300 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms