RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 TSC22D4Q9Y3Q8 395 aa13.52□□□□□ -0.25
GPC6-201ENST00000377047 MAP4K5Q9Y4K4 846 aa13.52□□□□□ -0.25
GPC6-201ENST00000377047 CTSOP43234 321 aaPredicted RBP13.51□□□□□ -0.25
GPC6-201ENST00000377047 GPD2P43304 727 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 SH3D19Q5HYK7 790 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 ESRP1Q6NXG1 681 aaKnown RBP13.51□□□□□ -0.25
GPC6-201ENST00000377047 PEG10Q86TG7 708 aaKnown RBP13.51□□□□□ -0.25
GPC6-201ENST00000377047 FBXW8Q8N3Y1 598 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 DCBLD1Q8N8Z6 715 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 ZNF540Q8NDQ6 660 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 CYB5D2Q8WUJ1 264 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 TWIST2Q8WVJ9 160 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 SLC44A1Q8WWI5 657 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 MFSD3Q96ES6 412 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 TRAPPC9Q96Q05 1148 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 TMEM175Q9BSA9 504 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 KCNN2Q9H2S1 579 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 CRISPLD1Q9H336 500 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 SEC14L3Q9UDX4 400 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 HEBP2Q9Y5Z4 205 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 SLIT2O94813 1529 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 TP73O15350 636 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 KIF1CO43896 1103 aaKnown RBP13.51□□□□□ -0.25
GPC6-201ENST00000377047 ANXA4P09525 319 aaPredicted RBP13.51□□□□□ -0.25
GPC6-201ENST00000377047 CRHR1P34998 444 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 TIMM50Q3ZCQ8 353 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 PPM1JQ5JR12 505 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 SLC25A24Q6NUK1 477 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 GALNT18Q6P9A2 607 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 MYDGFQ969H8 173 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 TEFMQ96QE5 360 aaKnown RBP13.51□□□□□ -0.25
GPC6-201ENST00000377047 A0A087WXM4 84 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 A0A1W2PQ45 241 aaPredicted RBP13.51□□□□□ -0.25
GPC6-201ENST00000377047 A0A1W2PQY0 241 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 IFNGP01579 166 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 PRKCGP05129 697 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 GIMD1P0DJR0 217 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 ASMTP46597 345 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 TAF1AQ15573 450 aaPredicted RBP13.51□□□□□ -0.25
GPC6-201ENST00000377047 TTC23Q5W5X9 447 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 KLHL17Q6TDP4 642 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 IRF2BP1Q8IU81 584 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 CPT1BQ92523 772 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 SDCBP2Q9H190 292 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 PRDM8Q9NQV8 689 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 GKN1Q9NS71 199 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 TCRBV7S2A1N4TA0A589 114 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 CYP4B1P13584 511 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 NRIP1P48552 1158 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 ECT2LQ008S8 904 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 PDGFRLQ15198 375 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 ENPP7Q6UWV6 458 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 SAPCD2Q86UD0 394 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 NEK7Q8TDX7 302 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 NECTIN3Q9NQS3 549 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 ADGRE2Q9UHX3 823 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 AVPR1BP47901 424 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 TRABD2AQ86V40 505 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 JAZF1Q86VZ6 243 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 HIPK1Q86Z02 1210 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 SLCO1B3Q9NPD5 702 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 Q9Y3F1 56 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 ARL5AQ9Y689 179 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 SESN1Q9Y6P5 492 aa13.51□□□□□ -0.25
GPC6-201ENST00000377047 COL6A2P12110 1019 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 BEND5Q7L4P6 421 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 MMAAQ8IVH4 418 aaKnown RBP13.5□□□□□ -0.25
GPC6-201ENST00000377047 NUAK2Q9H093 628 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 CXorf56Q9H5V9 222 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 WDR55Q9H6Y2 383 aaPredicted RBP13.5□□□□□ -0.25
GPC6-201ENST00000377047 ABI3Q9P2A4 366 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 GMEB2Q9UKD1 530 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 ERGIC3Q9Y282 383 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 TRAFD1O14545 582 aaPredicted RBP13.5□□□□□ -0.25
GPC6-201ENST00000377047 KIR3DL1P43629 444 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 POLR2JP52435 117 aaKnown RBP13.5□□□□□ -0.25
GPC6-201ENST00000377047 RPS24P62847 133 aaKnown RBP13.5□□□□□ -0.25
GPC6-201ENST00000377047 LARS2Q15031 903 aaKnown RBP13.5□□□□□ -0.25
GPC6-201ENST00000377047 RASGEF1CQ8N431 466 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 MREGQ8N565 214 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 MPP4Q96JB8 637 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 COPS7AQ9UBW8 275 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 REXO2Q9Y3B8 237 aaKnown RBP13.5□□□□□ -0.25
GPC6-201ENST00000377047 LTN1O94822 1766 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 ZNF536O15090 1300 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 DHRS12A0PJE2 317 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 ECDO95905 644 aaPredicted RBP13.5□□□□□ -0.25
GPC6-201ENST00000377047 SLC7A2P52569 658 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 STXBP1P61764 594 aaKnown RBP13.5□□□□□ -0.25
GPC6-201ENST00000377047 CHIT1Q13231 466 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 CCNIQ14094 377 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 ZNF730Q6ZMV8 503 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 CLEC20AQ6ZU45 233 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 UBASH3BQ8TF42 649 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 EEF1AKMT1Q8WVE0 214 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 TMEM27Q9HBJ8 222 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 TLR9Q9NR96 1032 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 HMGXB4Q9UGU5 601 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 ROBO1Q9Y6N7 1651 aa13.5□□□□□ -0.25
GPC6-201ENST00000377047 IQCMA0A1B0GVH7 501 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms