RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 F5H5T6 163 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 EIF2DP41214 584 aaKnown RBP12.52□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF720Q7Z2F6 126 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 CCDC24Q8N4L8 307 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 BEST4Q8NFU0 473 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 LENG9Q96B70 501 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 SNX15Q9NRS6 342 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 SEMA3GQ9NS98 782 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 PLA2G4CQ9UP65 541 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 A8MUI8 341 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 RPS17P08708 135 aaKnown RBP12.52□□□□□ -0.41
COL6A3-203ENST00000353578 CSTF1Q05048 431 aaKnown RBP12.52□□□□□ -0.41
COL6A3-203ENST00000353578 NAPRTQ6XQN6 538 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 SYVN1Q86TM6 617 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 SLC6A16Q9GZN6 736 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 UFSP2Q9NUQ7 469 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 MARK1Q9P0L2 795 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 GMDSO60547 372 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 UROSP10746 265 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 RPS3P23396 243 aaKnown RBP eCLIP12.52□□□□□ -0.41
COL6A3-203ENST00000353578 CDH5P33151 784 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-203ENST00000353578 TAF6P49848 677 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 SLC10A7Q0GE19 358 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF367Q7RTV3 350 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 GALNT7Q86SF2 657 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 HEXDCQ8WVB3 486 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 NXPE2Q96DL1 559 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 LMAN2LQ9H0V9 348 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 PNMA8BQ9ULN7 279 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-203ENST00000353578 TRPV2Q9Y5S1 764 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 NCF1BA6NI72 391 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 NCF1CA8MVU1 366 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 FSCN2O14926 492 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 ARL6IP5O75915 188 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 PAK4O96013 591 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 NCF1P14598 390 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 NDST1P52848 882 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 HADHBP55084 474 aaKnown RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF311Q5JNZ3 666 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 FAM71AQ8IYT1 594 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 RNF6Q9Y252 685 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 OAZ2O95190 189 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 TLX1P31314 330 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 ETV6P41212 452 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 TAS2R41P59536 307 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 GRB14Q14449 540 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 GLT1D1Q96MS3 346 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 VRK1Q99986 396 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 TRPV4Q9HBA0 871 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 LRRN3E7EW58 273 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 DNAJA1P31689 397 aaKnown RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 AIMP2Q13155 320 aaKnown RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 ACOX1Q15067 660 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 TSPEARQ8WU66 669 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 FEM1CQ96JP0 617 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 C7orf50Q9BRJ6 194 aaKnown RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 LRRN3Q9H3W5 708 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 BLOC1S4Q9NUP1 217 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 BTN3A1O00481 513 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 TFEBP19484 476 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 POLR2LP62875 67 aaKnown RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 CYCSP99999 105 aaKnown RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 SEMA3AQ14563 771 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 UCMAQ8WVF2 138 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 LPIN3Q9BQK8 851 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 OR51E2Q9H255 320 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 HSBP1L1C9JCN9 74 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 ZBTB14O43829 449 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 PRAF2O60831 178 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 OR6A2O95222 327 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 CPB1P15086 417 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 GRK5P34947 590 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 DYNLL1P63167 89 aaKnown RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 PPP2R2BQ00005 443 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 PTPN11Q06124 597 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 PRKD1Q15139 912 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 RNF149Q8NC42 400 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF436Q9C0F3 470 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 HCN1O60741 890 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 CCNYL3P0C7X3 344 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 KDELR1P24390 212 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 AZGP1P25311 298 aaKnown RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 LHX1P48742 406 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 TATDN1Q6P1N9 297 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 SSX6Q7RTT6 188 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 WDR53Q7Z5U6 358 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 KLHL36Q8N4N3 616 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 PPP1R16BQ96T49 567 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 ATP13A3Q9H7F0 1226 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 MAN1C1Q9NR34 630 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 FUOMA2VDF0 154 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 KIR3DL1P43629 444 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 NKX6-1P78426 367 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 BNIP3Q12983 259 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 AKR1C8PQ5T2L2 129 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 CPTPQ5TA50 214 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 LRRN1Q6UXK5 716 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 DNAJC14Q6Y2X3 702 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 ZCCHC23Q6ZST2 131 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 CIR1Q86X95 450 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms