RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 APOL2Q9BQE5 337 aa15.75■□□□□ 0.11
HMGA1-202ENST00000347617 FEM1AQ9BSK4 669 aa15.75■□□□□ 0.11
HMGA1-202ENST00000347617 ULBP1Q9BZM6 244 aa15.75■□□□□ 0.11
HMGA1-202ENST00000347617 CYP4F12Q9HCS2 524 aa15.75■□□□□ 0.11
HMGA1-202ENST00000347617 NECTIN3Q9NQS3 549 aa15.75■□□□□ 0.11
HMGA1-202ENST00000347617 TREX1Q9NSU2 369 aa15.75■□□□□ 0.11
HMGA1-202ENST00000347617 LRFN2Q9ULH4 789 aa15.75■□□□□ 0.11
HMGA1-202ENST00000347617 NAALAD2Q9Y3Q0 740 aa15.75■□□□□ 0.11
HMGA1-202ENST00000347617 PCDHGA11Q9Y5H2 935 aa15.75■□□□□ 0.11
HMGA1-202ENST00000347617 MYLKQ15746 1914 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 ISPDA4D126 451 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 NEMP2A6NFY4 417 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 TBC1D4O60343 1298 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 BCAS1O75363 584 aaPredicted RBP15.74■□□□□ 0.11
HMGA1-202ENST00000347617 EEDO75530 441 aaKnown RBP15.74■□□□□ 0.11
HMGA1-202ENST00000347617 JRKO75564 520 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 CLIC3O95833 236 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 CCNCP24863 283 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 NDUFV1P49821 464 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 MNX1P50219 401 aaPredicted RBP15.74■□□□□ 0.11
HMGA1-202ENST00000347617 KCNK10P57789 538 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 HERVK_113P63132 956 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 LIPEQ05469 1076 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 NFYCQ13952 458 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 CLPPQ16740 277 aaPredicted RBP15.74■□□□□ 0.11
HMGA1-202ENST00000347617 PAN2Q504Q3 1202 aaKnown RBP15.74■□□□□ 0.11
HMGA1-202ENST00000347617 ZNF470Q6ECI4 717 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 SLC2A7Q6PXP3 512 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 CYHR1Q6ZMK1 362 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 LRRTM3Q86VH5 581 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 NPAS4Q8IUM7 802 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 CADM3Q8N126 398 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 ZNF555Q8NEP9 628 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 BPIFB6Q8NFQ5 453 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 FAM110BQ8TC76 370 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 MUS81Q96NY9 551 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 SLC30A3Q99726 388 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 ERVK-6Q9BXR3 956 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 SP140LQ9H930 580 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 PARVBQ9HBI1 364 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 CPNE5Q9HCH3 593 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 LEF1Q9UJU2 399 aaPredicted RBP15.74■□□□□ 0.11
HMGA1-202ENST00000347617 FBXW11Q9UKB1 542 aa15.74■□□□□ 0.11
HMGA1-202ENST00000347617 TTC3P53804 2025 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 B4GALT3O60512 393 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 JCHAINP01591 159 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 FYNP06241 537 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 ETFBP38117 255 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 OR1G1P47890 313 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 RAD23AP54725 363 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 SMARCB1Q12824 385 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 IL18R1Q13478 541 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 ACOX1Q15067 660 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 VPS26BQ4G0F5 336 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 PLEKHG7Q6ZR37 379 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 RIMKLAQ8IXN7 391 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 PDZD8Q8NEN9 1154 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 CSF3RQ99062 836 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 FUNDC2Q9BWH2 189 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 TNFRSF12AQ9NP84 129 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 PIGVQ9NUD9 493 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 THG1LQ9NWX6 298 aaKnown RBP15.73■□□□□ 0.11
HMGA1-202ENST00000347617 USE1Q9NZ43 259 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 MTRRQ9UBK8 725 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 WARS2Q9UGM6 360 aaKnown RBP15.73■□□□□ 0.11
HMGA1-202ENST00000347617 BAG5Q9UL15 447 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 PDE10AQ9Y233 779 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 PCDHGB1Q9Y5G3 927 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 COL4A4P53420 1690 aaPredicted RBP15.73■□□□□ 0.11
HMGA1-202ENST00000347617 HTTP42858 3142 aa15.73■□□□□ 0.11
HMGA1-202ENST00000347617 OR6C75A6NL08 312 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 AZIN1O14977 448 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 PQBP1O60828 265 aaKnown RBP15.72■□□□□ 0.11
HMGA1-202ENST00000347617 RSL1D1O76021 490 aaKnown RBP15.72■□□□□ 0.11
HMGA1-202ENST00000347617 ENO2P09104 434 aaPredicted RBP15.72■□□□□ 0.11
HMGA1-202ENST00000347617 NCAM1P13591 858 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 BDNFP23560 247 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 ARNTP27540 789 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 PLCL1Q15111 1095 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 UNC50Q53HI1 259 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 C6orf141Q5SZD1 244 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 KANK2Q63ZY3 851 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 ESRP1Q6NXG1 681 aaKnown RBP15.72■□□□□ 0.11
HMGA1-202ENST00000347617 BHLHA9Q7RTU4 235 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 SPATA2LQ8IUW3 424 aaPredicted RBP15.72■□□□□ 0.11
HMGA1-202ENST00000347617 SVOPLQ8N434 492 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 PHF10Q8WUB8 498 aaKnown RBP15.72■□□□□ 0.11
HMGA1-202ENST00000347617 NSMCE2Q96MF7 247 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 KLHL25Q9H0H3 589 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 IL1RL2Q9HB29 575 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 SLC52A3Q9NQ40 469 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 TMEM30AQ9NV96 361 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 TMLHEQ9NVH6 421 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 GMPR2Q9P2T1 348 aaKnown RBP15.72■□□□□ 0.11
HMGA1-202ENST00000347617 KLHL3Q9UH77 587 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 IFT52Q9Y366 437 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 PCDHB3Q9Y5E6 796 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 YJEFN3A6XGL0 299 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 GABARAPO95166 117 aa15.72■□□□□ 0.11
HMGA1-202ENST00000347617 PAPSS2O95340 614 aaPredicted RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms