RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 SIX1Q15475 284 aaPredicted RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 HSF5Q4G112 596 aaPredicted RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 FAM72AQ5TYM5 149 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 FAM72DQ6L9T8 149 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 FAM72BQ86X60 149 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 DENND6AQ8IWF6 608 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 RHEBL1Q8TAI7 183 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 TSPEARQ8WU66 669 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 IPPKQ9H8X2 491 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 BPIFA1Q9NP55 256 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 IMP3Q9NV31 184 aaKnown RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 FBXL12Q9NXK8 326 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 TMCC3Q9ULS5 477 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 AURKCQ9UQB9 309 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SNX10Q9Y5X0 201 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 HEBP2Q9Y5Z4 205 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SNRPB2P08579 225 aaKnown RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 NMBRP28336 390 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 PBLDP30039 288 aaPredicted RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 GRIA1P42261 906 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 WDR4P57081 412 aaKnown RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SQLEQ14534 574 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 QPCTQ16769 361 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 GALNTL6Q49A17 601 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 CNSTQ6PJW8 725 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 CIR1Q86X95 450 aaPredicted RBP6.8□□□□□ -1.32
SF3B1-201ENST00000335508 C7orf57Q8NEG2 295 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 SHKBP1Q8TBC3 707 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 KHSRPQ92945 711 aaKnown RBP eCLIP6.8□□□□□ -1.324e-10■■■■□ 23.8
SF3B1-201ENST00000335508 MGME1Q9BQP7 344 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 ZNF556Q9HAH1 456 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 BATF3Q9NR55 127 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 MARCH5Q9NX47 278 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 ACSL5Q9ULC5 683 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 RABL2BQ9UNT1 228 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 HS3ST2Q9Y278 367 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 NAV1Q8NEY1 1877 aa6.8□□□□□ -1.32
SF3B1-201ENST00000335508 K7EPI3 171 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 ADH1BP00325 375 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 F11P03951 625 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 ANXA6P08133 673 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 HRH2P25021 359 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 NTSP30990 170 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 NUMBP49757 651 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 HNMTP50135 292 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 TSNQ15631 228 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 LSM12Q3MHD2 195 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 WLSQ5T9L3 541 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 IRAK1BP1Q5VVH5 260 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 LAYNQ6UX15 382 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 PATL1Q86TB9 770 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 ICA1LQ8NDH6 482 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 ACTRT2Q8TDY3 377 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SLC46A2Q9BY10 475 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SLC29A3Q9BZD2 475 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SNX7Q9UNH6 387 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 RUVBL1Q9Y265 456 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 LY75O60449 1722 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 MYH7P12883 1935 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SNTNA6NMZ2 147 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 NQO1P15559 274 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 WASP42768 502 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SLC1A2P43004 574 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 PSMD8P48556 350 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 LMAN2Q12907 356 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CYP51A1Q16850 503 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CLNKQ7Z7G1 428 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 OR13C4Q8NGS5 318 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 RNF217Q8TC41 542 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 NXNL1Q96CM4 212 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 BDH2Q9BUT1 245 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 EBF3Q9H4W6 596 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SLC12A4Q9UP95 1085 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 MAST2Q6P0Q8 1798 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 MYH9P35579 1960 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 MEI4A8MW99 385 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 DNAJA2O60884 412 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CLDN9O95484 217 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 VAV1P15498 845 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 GNSP15586 552 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 ATP6V1E1P36543 226 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SSR2P43308 183 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SCTRP47872 440 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 DEFB107AQ8IZN7 70 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 FGF13Q92913 245 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 TADA1Q96BN2 335 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 KLF16Q9BXK1 252 aaPredicted RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 GFRA2O00451 464 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 INPP4BO15327 924 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 KERAO60938 352 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 PEX11AO75192 247 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 RASGRP1O95267 797 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 OAS1P00973 400 aaKnown RBP6.79□□□□□ -1.32
SF3B1-201ENST00000335508 AHSGP02765 367 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 DRD1P21728 446 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 ACADVLP49748 655 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 CLCQ05315 142 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 BNIP2Q12982 314 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 SP140Q13342 867 aa6.79□□□□□ -1.32
SF3B1-201ENST00000335508 GSTA3Q16772 222 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms