RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MOGQ16653 247 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 RBM12BQ8IXT5 1001 aaKnown RBP14.18□□□□□ -0.14
COL7A1-201ENST00000328333 NDST1P52848 882 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 PRELID2Q8N945 189 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 AP2M1Q96CW1 435 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 NUSAP1Q9BXS6 441 aaKnown RBP14.18□□□□□ -0.14
COL7A1-201ENST00000328333 AGO4Q9HCK5 861 aaKnown RBP14.18□□□□□ -0.14
COL7A1-201ENST00000328333 CYP27B1O15528 508 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 XYLBO75191 536 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 CAPZA1P52907 286 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 MARSP56192 900 aaKnown RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 HMBOX1Q6NT76 420 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 C16orf46Q6P387 395 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 KLHDC10Q6PID8 442 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 TRAPPC5Q8IUR0 188 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 PCSK9Q8NBP7 692 aaKnown RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 PCDH19Q8TAB3 1148 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 CEMIPQ8WUJ3 1361 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 PTPRUQ92729 1446 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 CCNB2O95067 398 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 NR2C1P13056 603 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 IFI30P13284 250 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 SLC1A2P43004 574 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 AFF1P51825 1210 aaKnown RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 FGL1Q08830 312 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 ASTE1Q2TB18 679 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 WSCD2Q2TBF2 565 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 ATP13A4Q4VNC1 1196 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 CELF1Q92879 486 aaKnown RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 FAM84AQ96KN4 292 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 C8orf48Q96LL4 319 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 RIOX1Q9H6W3 641 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 RBMX2Q9Y388 322 aaKnown RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 TNFRSF11BO00300 401 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 C7P10643 843 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 APLP1P51693 650 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 TRAM1Q15629 374 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 ZYG11AQ6WRX3 759 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 AURKBQ96GD4 344 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 MARK4Q96L34 752 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 RDH8Q9NYR8 311 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 SULT2A1Q06520 285 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 PRKD1Q15139 912 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 ELMO1Q92556 727 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 LRTM1Q9HBL6 345 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 POLR3BQ9NW08 1133 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 REXO2Q9Y3B8 237 aaKnown RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 CAPN15O75808 1086 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 SLC41A1Q8IVJ1 513 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 SAMD14Q8IZD0 417 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF433Q8N7K0 673 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 EIF2B3Q9NR50 452 aaKnown RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 SLC27A6Q9Y2P4 619 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 OR1I1O60431 355 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 SLC27A1Q6PCB7 646 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 C12orf50Q8NA57 414 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 LRRC3Q9BY71 257 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 PCBD2Q9H0N5 130 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 NUDT4Q9NZJ9 180 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 MARCH2Q9P0N8 246 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 POLR3HQ9Y535 204 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF14P17017 642 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 GRK5P34947 590 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 CSTF1Q05048 431 aaKnown RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 CCSAPQ6IQ19 270 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 METTL7BQ6UX53 244 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF668Q96K58 619 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-201ENST00000328333 KCNQ5Q9NR82 932 aa14.17□□□□□ -0.14
COL7A1-201ENST00000328333 ACKR2O00590 384 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 GSTM3P21266 225 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 NATD1Q8N6N6 113 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 NR4A3Q92570 626 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 SLC38A4Q969I6 547 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 TRIM36Q9NQ86 728 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 PCDHB12Q9Y5F1 795 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 ENTPD6O75354 484 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 DNASE1L1P49184 302 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 CDK18Q07002 472 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 SPG21Q9NZD8 308 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF510Q9Y2H8 683 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 CDH10Q9Y6N8 788 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 AQP12BA6NM10 295 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 IFNA21P01568 189 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 RBL1P28749 1068 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 AQP12AQ8IXF9 295 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 OR2L3Q8NG85 312 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 SH2D3AQ9BRG2 576 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 ZYG11BQ9C0D3 744 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 GAKO14976 1311 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 hCG_1818297A0A087WSY0 165 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 RPL6Q02878 288 aaKnown RBP14.16□□□□□ -0.14
COL7A1-201ENST00000328333 FOXM1Q08050 763 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 OR52K1Q8NGK4 314 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 SPATA20Q8TB22 786 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 TBX1O43435 398 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 SLC12A3P55017 1021 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 RALGDSQ12967 914 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 RDH12Q96NR8 316 aa14.16□□□□□ -0.14
COL7A1-201ENST00000328333 METTL8Q9H825 291 aaKnown RBP14.16□□□□□ -0.14
COL7A1-201ENST00000328333 MKS1Q9NXB0 559 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms