RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 CLDN19Q8N6F1 224 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 UTP15Q8TED0 518 aaKnown RBP12.56□□□□□ -0.4
RETREG3-201ENST00000309428 CCDC126Q96EE4 140 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 MRGPRX2Q96LB1 330 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 MUS81Q96NY9 551 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 VPS28Q9UK41 221 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 MAGED1Q9Y5V3 778 aaPredicted RBP12.56□□□□□ -0.4
RETREG3-201ENST00000309428 SLC30A1Q9Y6M5 507 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 CCDC162PA2VCL2 907 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 OR1I1O60431 355 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 DUSP11O75319 330 aaKnown RBP12.56□□□□□ -0.4
RETREG3-201ENST00000309428 GJB5O95377 273 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 BMP1P13497 986 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 BCAP31P51572 246 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 BMXP51813 675 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 HNRNPDQ14103 355 aaKnown RBP12.56□□□□□ -0.4
RETREG3-201ENST00000309428 TSNQ15631 228 aaKnown RBP12.56□□□□□ -0.4
RETREG3-201ENST00000309428 IL27RAQ6UWB1 636 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 TMEM173Q86WV6 379 aaPredicted RBP12.56□□□□□ -0.4
RETREG3-201ENST00000309428 GTF3C2Q8WUA4 911 aaPredicted RBP12.56□□□□□ -0.4
RETREG3-201ENST00000309428 SLC2A13Q96QE2 648 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 ZYG11BQ9C0D3 744 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 HIPK3Q9H422 1215 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 ENTPD7Q9NQZ7 604 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 PKP3Q9Y446 797 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 PCDHB7Q9Y5E2 793 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 FUOMA2VDF0 154 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 NPEPPSL1A6NEC2 478 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 AZIN1O14977 448 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 NIPSNAP2O75323 286 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 FCGR1AP12314 374 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 MAGEA8P43361 318 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 KCNC1P48547 511 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 IDH2P48735 452 aaKnown RBP12.56□□□□□ -0.4
RETREG3-201ENST00000309428 PRKAA2P54646 552 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 CDKN2DP55273 166 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 C1QTNF8P60827 252 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 SYT16Q17RD7 645 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 TMEM135Q86UB9 458 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 HORMAD1Q86X24 394 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 DCP1BQ8IZD4 617 aaKnown RBP12.56□□□□□ -0.4
RETREG3-201ENST00000309428 CENPNQ96H22 339 aaPredicted RBP12.56□□□□□ -0.4
RETREG3-201ENST00000309428 SERPINB11Q96P15 392 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 SH3GL1Q99961 368 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 HGH1Q9BTY7 390 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 CEP44Q9C0F1 390 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 ZNF696Q9H7X3 374 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 RIMS3Q9UJD0 308 aa12.56□□□□□ -0.4
RETREG3-201ENST00000309428 KRT87PA6NCN2 255 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 SNPHO15079 494 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 STX7O15400 261 aaKnown RBP12.55□□□□□ -0.4
RETREG3-201ENST00000309428 MYO1DO94832 1006 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ALDH2P05091 517 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 CCT8P50990 548 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 HK2P52789 917 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 LRRC74AQ0VAA2 488 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 MEP1AQ16819 746 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 C18orf21Q32NC0 220 aaPredicted RBP12.55□□□□□ -0.4
RETREG3-201ENST00000309428 SIRPB2Q5JXA9 342 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ANKS6Q68DC2 871 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 FAM110BQ8TC76 370 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 LRCH3Q96II8 777 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ACBD6Q9BR61 282 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ASPSCR1Q9BZE9 553 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 SMURF2Q9HAU4 748 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 OLA1Q9NTK5 396 aaKnown RBP12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ZDHHC7Q9NXF8 308 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 AASSQ9UDR5 926 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ANKRD6Q9Y2G4 727 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 A8MV72 311 aaPredicted RBP12.55□□□□□ -0.4
RETREG3-201ENST00000309428 SDHDO14521 159 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 MATN3O15232 486 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 SERPINF2P08697 491 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ALPIP09923 528 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 AZGP1P25311 298 aaKnown RBP12.55□□□□□ -0.4
RETREG3-201ENST00000309428 PRDX6P30041 224 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 MTHFRP42898 656 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 DIO3P55073 304 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 FPGSQ05932 587 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 IFNL1Q8IU54 200 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ZNF540Q8NDQ6 660 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 CD99L2Q8TCZ2 262 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 TWIST2Q8WVJ9 160 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 TOR3AQ9H497 397 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 AKTIPQ9H8T0 292 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 RNF186Q9NXI6 227 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 GIT1Q9Y2X7 761 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 FCF1Q9Y324 198 aaKnown RBP12.55□□□□□ -0.4
RETREG3-201ENST00000309428 RNF11Q9Y3C5 154 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 PTCH2Q9Y6C5 1203 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 PAPPA2Q9BXP8 1791 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 A8MT66 165 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 UPK3BL1B0FP48 263 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 CLDN25C9JDP6 229 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 UPK3BL2E5RIL1 263 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 CDC7O00311 574 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 GSRP00390 522 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 DPP6P42658 865 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 FOXA1P55317 472 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ZNF829Q3KNS6 432 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms