RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 LRATO95237 230 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 ZNF423Q2M1K9 1284 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 PLEKHG6Q3KR16 790 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 MAP1SQ66K74 1059 aaPredicted RBP19.15■□□□□ 0.66
USP48-201ENST00000308271 LRRC17Q8N6Y2 441 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 CHCHD6Q9BRQ6 235 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 IPPKQ9H8X2 491 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 TMPRSS4Q9NRS4 437 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 PCDHB7Q9Y5E2 793 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 CATP04040 527 aaKnown RBP19.15■□□□□ 0.66
USP48-201ENST00000308271 RHOQP17081 205 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 OGNP20774 298 aaKnown RBP19.15■□□□□ 0.66
USP48-201ENST00000308271 ALDH9A1P49189 494 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 MVKQ03426 396 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 MYBPC3Q14896 1274 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 PAFAH1B3Q15102 231 aaKnown RBP19.15■□□□□ 0.66
USP48-201ENST00000308271 LYPLAL1Q5VWZ2 237 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 THOC7Q6I9Y2 204 aaKnown RBP19.15■□□□□ 0.66
USP48-201ENST00000308271 FAM131AQ6UXB0 335 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 PRR23BQ6ZRT6 265 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 ZDHHC21Q8IVQ6 265 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 COLGALT2Q8IYK4 626 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 RBFAQ8N0V3 343 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 CACTIN-AS1Q8N1I8 211 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 CLHC1Q8NHS4 586 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 SLC35F5Q8WV83 523 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 VPS4AQ9UN37 437 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 PSMA1P25786 263 aaKnown RBP19.15■□□□□ 0.66
USP48-201ENST00000308271 RPL3P39023 403 aaKnown RBP19.15■□□□□ 0.66
USP48-201ENST00000308271 NDUFV1P49821 464 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 ALDH3A2P51648 485 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 DSC2Q02487 901 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 SCN1BQ07699 218 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 VGLL4Q14135 290 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 DCBLD1Q8N8Z6 715 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 ATL1Q8WXF7 558 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 FAIMQ9NVQ4 179 aa19.15■□□□□ 0.66
USP48-201ENST00000308271 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.14■□□□□ 0.66
USP48-201ENST00000308271 CCL22O00626 93 aa19.14■□□□□ 0.66
USP48-201ENST00000308271 SH3BGRLO75368 114 aa19.14■□□□□ 0.66
USP48-201ENST00000308271 IGSF6O95976 241 aa19.14■□□□□ 0.66
USP48-201ENST00000308271 TIE1P35590 1138 aa19.14■□□□□ 0.66
USP48-201ENST00000308271 ATP4BP51164 291 aa19.14■□□□□ 0.66
USP48-201ENST00000308271 C11orf91Q3C1V1 193 aa19.14■□□□□ 0.66
USP48-201ENST00000308271 TMEM209Q96SK2 561 aa19.14■□□□□ 0.66
USP48-201ENST00000308271 ATP6V1HQ9UI12 483 aa19.14■□□□□ 0.66
USP48-201ENST00000308271 PCDHB1Q9Y5F3 818 aa19.14■□□□□ 0.66
USP48-201ENST00000308271 PORP16435 677 aaPredicted RBP19.14■□□□□ 0.65
USP48-201ENST00000308271 DNAJB13P59910 316 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 ANXA8L1Q5VT79 327 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 TMEM192Q8IY95 271 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 WDTC1Q8N5D0 677 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 A0A1B0GVG6 124 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 E9PAM4 449 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 PGLSO95336 258 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 RPLP0P05388 317 aaKnown RBP19.14■□□□□ 0.65
USP48-201ENST00000308271 SMIM10L2AP0DMW4 78 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 SMIM10L2BP0DMW5 78 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 DARSP14868 501 aaKnown RBP19.14■□□□□ 0.65
USP48-201ENST00000308271 GCAP28676 217 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 STT3AP46977 705 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 BLVRAP53004 296 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 FBXO48Q5FWF7 155 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 TRIM40Q6P9F5 258 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 LBX2Q6XYB7 198 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 ZC3H7AQ8IWR0 971 aaKnown RBP19.14■□□□□ 0.65
USP48-201ENST00000308271 ERLEC1Q96DZ1 483 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 MRPL48Q96GC5 212 aaKnown RBP19.14■□□□□ 0.65
USP48-201ENST00000308271 SNX27Q96L92 541 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 AASDHPPTQ9NRN7 309 aa19.14■□□□□ 0.65
USP48-201ENST00000308271 CCM2LQ9NUG4 571 aaPredicted RBP19.14■□□□□ 0.65
USP48-201ENST00000308271 A0A1W2PP18 115 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 CD36P16671 472 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 YBEYP58557 167 aaPredicted RBP19.13■□□□□ 0.65
USP48-201ENST00000308271 RAB39AQ14964 217 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 PARP15Q460N3 678 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 PIGGQ5H8A4 983 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 USP43Q70EL4 1123 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 TAC4Q86UU9 113 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 ARMC8Q8IUR7 673 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 SLC25A13Q9UJS0 675 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 AGO1Q9UL18 857 aaKnown RBP19.13■□□□□ 0.65
USP48-201ENST00000308271 CNTNAP1P78357 1384 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 SDHDO14521 159 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 MSI1O43347 362 aaKnown RBP19.13■□□□□ 0.65
USP48-201ENST00000308271 GOT2P00505 430 aaKnown RBP19.13■□□□□ 0.65
USP48-201ENST00000308271 CYP11A1P05108 521 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 LMO2P25791 158 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 ATP5C1P36542 298 aaKnown RBP19.13■□□□□ 0.65
USP48-201ENST00000308271 TGFBIQ15582 683 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 ELMSAN1Q6PJG2 1045 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 UGT2A3Q6UWM9 527 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 GATAD2AQ86YP4 633 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 SMAD5Q99717 465 aaKnown RBP19.13■□□□□ 0.65
USP48-201ENST00000308271 COPS4Q9BT78 406 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 ZIM2Q9NZV7 527 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 NBNO60934 754 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 CYP3A5P20815 502 aa19.13■□□□□ 0.65
USP48-201ENST00000308271 WARSP23381 471 aaKnown RBP19.13■□□□□ 0.65
USP48-201ENST00000308271 NPTX1Q15818 432 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms