RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SLC19A1P41440 591 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 SSR1P43307 286 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 NIPAL4Q0D2K0 466 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 MMRN1Q13201 1228 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 DPYSL3Q14195 570 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 IHHQ14623 411 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 PDK2Q15119 407 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 FHL5Q5TD97 284 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 AGAP9Q5VTM2 703 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 CACHD1Q5VU97 1274 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 NCBP2-AS2Q69YL0 99 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 KLHL35Q6PF15 583 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 ABRAXAS1Q6UWZ7 409 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 TRAM1L1Q8N609 369 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 KCTD6Q8NC69 237 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 THAP4Q8WY91 577 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 GLYATL1Q969I3 302 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 CXorf40BQ96DE9 158 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 ZNF830Q96NB3 372 aaPredicted RBP14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 SRPK1Q96SB4 655 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 GPR87Q9BY21 358 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 SLC40A1Q9NP59 571 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 SLC30A1Q9Y6M5 507 aa14.54□□□□□ -0.08
CCDC88B-201ENST00000301897 TTLL8A6PVC2 850 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 AGFG2O95081 481 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 FURINP09958 794 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 IDSP22304 550 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 CD86P42081 329 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 SH3BP2P78314 561 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 SEMA5AQ13591 1074 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 E4F1Q66K89 784 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 ADGRG6Q86SQ4 1221 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 CCNYQ8ND76 341 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 UBXN4Q92575 508 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 HDAC11Q96DB2 347 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 NUP85Q9BW27 656 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 BRD8Q9H0E9 1235 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 MAGEE1Q9HCI5 957 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 LHX9Q9NQ69 397 aa14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 SCHIP1Q9P0W5 487 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 ZNF624Q9P2J8 865 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-201ENST00000301897 SMTNL1A8MU46 457 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 KCNJ13O60928 360 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 CYP1A2P05177 515 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 CD48P09326 243 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 SKILP12757 684 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 HALP42357 657 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 LEPRP48357 1165 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 ARSEP51690 589 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 PGDP52209 483 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 PDE1BQ01064 536 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 FIGNQ5HY92 759 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 CAPRIN2Q6IMN6 1127 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 IRGCQ6NXR0 463 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 CRTC3Q6UUV7 619 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 SIDT2Q8NBJ9 832 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 CPT1CQ8TCG5 803 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 CT55Q8WUE5 264 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 ELMO2Q96JJ3 720 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 THAP2Q9H0W7 228 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 ACTL8Q9H568 366 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 SEMA5BQ9P283 1151 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 PLEKHB1Q9UF11 243 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 SLC23A2Q9UGH3 650 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 LCMT1Q9UIC8 334 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 RARRES3Q9UL19 164 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 PCDHGA9Q9Y5G4 932 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 DOPEY1Q5JWR5 2465 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 HIVEP3Q5T1R4 2406 aa14.52□□□□□ -0.09
CCDC88B-201ENST00000301897 K7EM74 188 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 CDK14O94921 469 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 JCHAINP01591 159 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 MMP2P08253 660 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 VARSP26640 1264 aaKnown RBP14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 PTPN4P29074 926 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 RPS15P62841 145 aaKnown RBP14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 IFI35P80217 286 aaPredicted RBP14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 ACY1Q03154 408 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 TUBB3Q13509 450 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 GPR18Q14330 331 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 SLC14A2Q15849 920 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 SEPT7Q16181 437 aaKnown RBP14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 UGT8Q16880 541 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 ALS2CLQ60I27 953 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 KMT5CQ86Y97 462 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 GPR26Q8NDV2 337 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 RSC1A1Q92681 617 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 SYN2Q92777 582 aaPredicted RBP14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 FAF2Q96CS3 445 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 SLC41A2Q96JW4 573 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 BTBD6Q96KE9 485 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 BPIFA3Q9BQP9 254 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 GPR63Q9BZJ6 419 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 ARFGAP3Q9NP61 516 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 CUEDC1Q9NWM3 386 aaPredicted RBP14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 DNAJC16Q9Y2G8 782 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 PCDHGB7Q9Y5F8 929 aa14.51□□□□□ -0.09
CCDC88B-201ENST00000301897 KIF1CO43896 1103 aaKnown RBP14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 BRAFP15056 766 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 RPL10P27635 214 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms