RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 HGFP14210 728 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 SP100P23497 879 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-201ENST00000295550 ADORA2AP29274 412 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 NAGLUP54802 743 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 SMU1Q2TAY7 513 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 ZNF730Q6ZMV8 503 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 TRAPPC5Q8IUR0 188 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 FAXDC2Q96IV6 333 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 C12orf66Q96MD2 445 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 KCNN2Q9H2S1 579 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 DENND2DQ9H6A0 471 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-201ENST00000295550 BTRCQ9Y297 605 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 ZW10O43264 779 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 OXCT2Q9BYC2 517 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-201ENST00000295550 CIPCQ9C0C6 399 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 C11orf16Q9NQ32 467 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 ZNF639Q9UID6 485 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 LRCH4O75427 683 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 TTPAP49638 278 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 LRRC52Q8N7C0 313 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 GSTCDQ8NEC7 633 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 IPCEF1Q8WWN9 437 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-201ENST00000295550 CLIP3Q96DZ5 547 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 SEMA3GQ9NS98 782 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 CACNA1SQ13698 1873 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 PRKG2Q13237 762 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 AP1S3Q96PC3 154 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 ATXN3LQ9H3M9 355 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 SMPD3Q9NY59 655 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-201ENST00000295550 H0YGN5 161 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 PIAS1O75925 651 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 IGSF6O95976 241 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 RAD51AP1Q96B01 352 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 ZNF317Q96PQ6 595 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-201ENST00000295550 TEFMQ96QE5 360 aaKnown RBP9.8□□□□□ -0.84
COL6A3-201ENST00000295550 PANX1Q96RD7 426 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 C1QTNF7Q9BXJ2 289 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 XKR8Q9H6D3 395 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 MARK1Q9P0L2 795 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 MEMO1Q9Y316 297 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 NFS1Q9Y697 457 aa9.8□□□□□ -0.84
COL6A3-201ENST00000295550 PAPPAQ13219 1627 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 CASTOR2A6NHX0 329 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 KMOO15229 486 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 COLEC11Q9BWP8 271 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 DUSP16Q9BY84 665 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 ADGRE2Q9UHX3 823 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 AKAP8O43823 692 aaKnown RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 GRK5P34947 590 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 MPPE1Q53F39 396 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 ADGRG2Q8IZP9 1017 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 OR52K2Q8NGK3 314 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 HM13Q8TCT9 377 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 RAB2BQ8WUD1 216 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 SPOCK2Q92563 424 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 TOP1MTQ969P6 601 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 RHBGQ9H310 441 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 ABCC13Q9NSE7 274 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 COQ4Q9Y3A0 265 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 OR2B6P58173 313 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 ELP6Q0PNE2 266 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 PSMD5Q16401 504 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 SLC35G1Q2M3R5 365 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 CNPY1Q3B7I2 92 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 SLC25A52Q3SY17 297 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 OGFOD2Q6N063 350 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 USP45Q70EL2 814 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 RAB11FIP2Q7L804 512 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 AKAP1Q92667 903 aaKnown RBP eCLIP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 MTIF3Q9H2K0 278 aaKnown RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 MAGEE1Q9HCI5 957 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 TAF1P21675 1872 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 NRCAMQ92823 1304 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 BBIP1A8MTZ0 92 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 SLC22A2O15244 555 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 CXCR2P25025 360 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 CPTPQ5TA50 214 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 RD3Q7Z3Z2 195 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 ITIH5Q86UX2 942 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 GPC2Q8N158 579 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 PTGR2Q8N8N7 351 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 MAFBQ9Y5Q3 323 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 PRR5-ARHGAP8B1AHC4 643 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 CCRL2O00421 344 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 HOXA2O43364 376 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 GIMD1P0DJR0 217 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 ARHGAP8P85298 464 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 XKR6Q5GH73 641 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 PPP1R26Q5T8A7 1209 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 QSOX2Q6ZRP7 698 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 DET1Q7L5Y6 550 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 NKAPQ8N5F7 415 aaKnown RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 KCTD4Q8WVF5 259 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 SPACA7Q96KW9 195 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 GMIPQ9P107 970 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 MRPL42Q9Y6G3 142 aaKnown RBP9.79□□□□□ -0.84
COL6A3-201ENST00000295550 AKAP6Q13023 2319 aa9.79□□□□□ -0.84
COL6A3-201ENST00000295550 GTPBP1O00178 669 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms