RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 OR2T11Q8NH01 316 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 FBXL8Q96CD0 374 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 MYRFLQ96LU7 910 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 DEFB118Q96PH6 123 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 ATOH8Q96SQ7 321 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 GPR21Q99679 349 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 RNF208Q9H0X6 261 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 ARNT2Q9HBZ2 717 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 ZNF225Q9UK10 706 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 OAS3Q9Y6K5 1087 aaKnown RBP9.97□□□□□ -0.81
LIG3-201ENST00000262327 IQCF5A8MTL0 148 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 WISP3O95389 354 aaPredicted RBP9.96□□□□□ -0.81
LIG3-201ENST00000262327 BMP10O95393 424 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 C1RP00736 705 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 ALDH2P05091 517 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 MYF6P23409 242 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 IL12AP29459 219 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 CCR3P51677 355 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 KCNK10P57789 538 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 NAA20P61599 178 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 BFSP2Q13515 415 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 SLC14A2Q15849 920 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 ATP6AP1Q15904 470 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 ZBED5Q49AG3 693 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 LDLRAP1Q5SW96 308 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 AFMIDQ63HM1 303 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 BLOC1S3Q6QNY0 202 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 SYVN1Q86TM6 617 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 TRPV3Q8NET8 790 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 HM13Q8TCT9 377 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 PKMYT1Q99640 499 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 HOPXQ9BPY8 73 aaPredicted RBP9.96□□□□□ -0.81
LIG3-201ENST00000262327 ZBED2Q9BTP6 218 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 TRMOQ9BU70 441 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 OSBPL6Q9BZF3 934 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 ZYG11BQ9C0D3 744 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 ATP13A1Q9HD20 1204 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 CATSPERZQ9NTU4 200 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 GID8Q9NWU2 228 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 ACTR3BQ9P1U1 418 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 ABCD2Q9UBJ2 740 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 ITGB1BP2Q9UKP3 347 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 SLC27A5Q9Y2P5 690 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 PCDHA9Q9Y5H5 950 aa9.96□□□□□ -0.81
LIG3-201ENST00000262327 H3BMQ9 156 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 SCAMP3O14828 347 aaKnown RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 KATNA1O75449 491 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 KCNH1O95259 989 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 CYBBP04839 570 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 ZNF182P17025 639 aaPredicted RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 OR1E1P30953 314 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 PIK3CGP48736 1102 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 DGKQP52824 942 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 CYBRD1Q53TN4 286 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 KANK2Q63ZY3 851 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 TRAF7Q6Q0C0 670 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 HACD2Q6Y1H2 254 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 DCP1BQ8IZD4 617 aaKnown RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 HS3ST5Q8IZT8 346 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 MINDY1Q8N5J2 469 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 OR4L1Q8NH43 312 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 GIPC3Q8TF64 312 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 STON2Q8WXE9 905 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 ZUFSPQ96AP4 578 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 BIRC7Q96CA5 298 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 RMDN1Q96DB5 314 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 DUS3LQ96G46 650 aaKnown RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 NSMCE3Q96MG7 304 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 COG8Q96MW5 612 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 MUS81Q96NY9 551 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 ADAM2Q99965 735 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 SPON2Q9BUD6 331 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 C9orf16Q9BUW7 83 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 CRISPLD2Q9H0B8 497 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 SDR39U1Q9NRG7 319 aaPredicted RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 GIT1Q9Y2X7 761 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 GPR45Q9Y5Y3 372 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 CCDC154A6NI56 674 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 AQP12BA6NM10 295 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 NIPSNAP2O75323 286 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 OR4F21O95013 312 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 RPS9P46781 194 aaKnown RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 TUBA4AP68366 448 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 GALNT1Q10472 559 aaPredicted RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 TRAF2Q12933 501 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 LAPTM5Q13571 262 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 ZNF235Q14590 738 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 LCN8Q6JVE9 175 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 NANOGP8Q6NSW7 305 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 FBXO46Q6PJ61 603 aaPredicted RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 ITIH5Q86UX2 942 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 ZNF280BQ86YH2 543 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 AQP12AQ8IXF9 295 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 THEM5Q8N1Q8 247 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 FNDC5Q8NAU1 212 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 SIDT2Q8NBJ9 832 aaKnown RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 BPIFB6Q8NFQ5 453 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 OR4K2Q8NGD2 314 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 OR52B6Q8NGF0 335 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 FNDC8Q8TC99 324 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms