RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 FKBPLQ9UIM3 349 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 ZNF780BQ9Y6R6 833 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 ISM1B1AKI9 464 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 DEAF1O75398 565 aaPredicted RBP13.53□□□□□ -0.24
LDLR-201ENST00000252444 SOX30O94993 753 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 RASGRP1O95267 797 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 PIK3R1P27986 724 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 SERPINB3P29508 390 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 GNPDA1P46926 289 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 SERPINB10P48595 397 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 SEC24CP53992 1094 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 TBL3Q12788 808 aaKnown RBP13.53□□□□□ -0.24
LDLR-201ENST00000252444 HERC3Q15034 1050 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 DHFR2Q86XF0 187 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 SETD9Q8NE22 299 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 RASSF5Q8WWW0 418 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 KCNJ9Q92806 393 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 PLEKHG4BQ96PX9 1271 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 GPR21Q99679 349 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 CPEB1Q9BZB8 566 aaKnown RBP13.53□□□□□ -0.24
LDLR-201ENST00000252444 SEMA4BQ9NPR2 832 aaPredicted RBP13.53□□□□□ -0.24
LDLR-201ENST00000252444 TRAF6Q9Y4K3 522 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 RBBP6Q7Z6E9 1792 aaKnown RBP13.53□□□□□ -0.24
LDLR-201ENST00000252444 A0A0U1RQJ8 604 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 FAM220BPB1ANY3 271 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 E7ESA3 106 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 MATN2O00339 956 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 GFRA2O00451 464 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 ATP1B2P14415 290 aaPredicted RBP13.53□□□□□ -0.24
LDLR-201ENST00000252444 NAGLUP54802 743 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 OVGP1Q12889 678 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 MTM1Q13496 603 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 DCAF12L1Q5VU92 463 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 SLC9B2Q86UD5 537 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 CNTD1Q8N815 330 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 TRPC4APQ8TEL6 797 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 CDKN2AIPNLQ96HQ2 116 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 MYO5AQ9Y4I1 1855 aaKnown RBP13.53□□□□□ -0.24
LDLR-201ENST00000252444 FOCADQ5VW36 1801 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 HEPACAM2A8MVW5 462 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 E9PBE3 544 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 KLHL41O60662 606 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 ALBP02768 609 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 SHBGP04278 402 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 PKDCCQ504Y2 493 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 MFSD4BQ5TF39 518 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 ZNF852Q6ZMS4 543 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 NET1Q7Z628 596 aaPredicted RBP13.52□□□□□ -0.24
LDLR-201ENST00000252444 ZNF513Q8N8E2 541 aaPredicted RBP13.52□□□□□ -0.24
LDLR-201ENST00000252444 RTKNQ9BST9 563 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 BUD31P41223 144 aaPredicted RBP13.52□□□□□ -0.24
LDLR-201ENST00000252444 PIK3CBP42338 1070 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 INPP1P49441 399 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 LY6G5CQ5SRR4 150 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 GPR22Q99680 433 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 TBX21Q9UL17 535 aa13.52□□□□□ -0.24
LDLR-201ENST00000252444 BST1Q10588 318 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 ARSIQ5FYB1 569 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 LINGO4Q6UY18 593 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 RBM12BQ8IXT5 1001 aaKnown RBP13.52□□□□□ -0.25
LDLR-201ENST00000252444 ZSCAN32Q9NX65 697 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 PCDHGC4Q9Y5F7 938 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 PLIN3O60664 434 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 ARHGEF15O94989 841 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 CPSF4O95639 269 aaKnown RBP13.52□□□□□ -0.25
LDLR-201ENST00000252444 SLC35G6P0C7Q6 338 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 FASP25445 335 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 NMBRP28336 390 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 MAGEA6P43360 314 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 TNFRSF4P43489 277 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 SCTRP47872 440 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 DHCR24Q15392 516 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 STEAP4Q687X5 459 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 TMCO5AQ8N6Q1 288 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 C2CD4AQ8NCU7 369 aaPredicted RBP13.52□□□□□ -0.25
LDLR-201ENST00000252444 AUTS2Q8WXX7 1259 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 AARSD1Q9BTE6 412 aaKnown RBP13.52□□□□□ -0.25
LDLR-201ENST00000252444 CWH43Q9H720 699 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 PLK2Q9NYY3 685 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 SH3BP4Q9P0V3 963 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 SPATA7Q9P0W8 599 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 NENFQ9UMX5 172 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 TEX264Q9Y6I9 313 aa13.52□□□□□ -0.25
LDLR-201ENST00000252444 NPEPPSL1A6NEC2 478 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 RHPN2P1A8MT19 583 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 DNAJB13P59910 316 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 CRADDP78560 199 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 SLC10A7Q0GE19 358 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 ABRQ12979 859 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 UBXN2BQ14CS0 331 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 B3GALT6Q96L58 329 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 EXD2Q9NVH0 621 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 TCRBV7S2A1N4TA0A589 114 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 TMEM220Q6QAJ8 160 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 ZDHHC24Q6UX98 284 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 DET1Q7L5Y6 550 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 PROX1Q92786 737 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 HIC2Q96JB3 615 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 PPP1R36Q96LQ0 422 aa13.51□□□□□ -0.25
LDLR-201ENST00000252444 CATSPER2Q96P56 530 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms