RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 CDCA8Q53HL2 280 aa10.92□□□□□ -0.66
PNKP-229ENST00000637897 DDX54Q8TDD1 881 aaKnown RBP10.92□□□□□ -0.66
PNKP-229ENST00000637897 POLKQ9UBT6 870 aa10.92□□□□□ -0.66
PNKP-229ENST00000637897 KAT6BQ8WYB5 2073 aa10.92□□□□□ -0.66
PNKP-229ENST00000637897 FLT4P35916 1363 aa10.91□□□□□ -0.66
PNKP-229ENST00000637897 MAP2P11137 1827 aaKnown RBP10.91□□□□□ -0.66
PNKP-229ENST00000637897 KCNQ4P56696 695 aa10.91□□□□□ -0.66
PNKP-229ENST00000637897 SGIP1Q9BQI5 828 aa10.91□□□□□ -0.66
PNKP-229ENST00000637897 DOT1LQ8TEK3 1739 aa10.91□□□□□ -0.66
PNKP-229ENST00000637897 TOGARAM1Q9Y4F4 1720 aa10.9□□□□□ -0.66
PNKP-229ENST00000637897 CYP27B1O15528 508 aa10.9□□□□□ -0.66
PNKP-229ENST00000637897 PRIM1P49642 420 aaKnown RBP10.9□□□□□ -0.66
PNKP-229ENST00000637897 EIF4G2P78344 907 aaKnown RBP eCLIP10.9□□□□□ -0.66
PNKP-229ENST00000637897 SLC15A2Q16348 729 aa10.9□□□□□ -0.66
PNKP-229ENST00000637897 NBPF14Q5TI25 921 aa10.9□□□□□ -0.66
PNKP-229ENST00000637897 ZCRB1Q8TBF4 217 aaKnown RBP10.9□□□□□ -0.66
PNKP-229ENST00000637897 PANK3Q9H999 370 aa10.9□□□□□ -0.66
PNKP-229ENST00000637897 KIF24Q5T7B8 1368 aa10.9□□□□□ -0.67
PNKP-229ENST00000637897 WASHC2AQ641Q2 1341 aa10.89□□□□□ -0.67
PNKP-229ENST00000637897 AKT1S1Q96B36 256 aa10.89□□□□□ -0.67
PNKP-229ENST00000637897 EYA1Q99502 592 aa10.89□□□□□ -0.67
PNKP-229ENST00000637897 LY75O60449 1722 aa10.89□□□□□ -0.67
PNKP-229ENST00000637897 ZBTB7AO95365 584 aa10.88□□□□□ -0.67
PNKP-229ENST00000637897 PKD1L3Q7Z443 1732 aa10.88□□□□□ -0.67
PNKP-229ENST00000637897 TUBGCP6Q96RT7 1819 aa10.88□□□□□ -0.67
PNKP-229ENST00000637897 UTRNP46939 3433 aa10.87□□□□□ -0.67
PNKP-229ENST00000637897 EIF4A2Q14240 407 aaKnown RBP10.87□□□□□ -0.67
PNKP-229ENST00000637897 POLR3GLQ9BT43 218 aa10.87□□□□□ -0.67
PNKP-229ENST00000637897 CGNL1Q0VF96 1302 aa10.86□□□□□ -0.67
PNKP-229ENST00000637897 KIF7Q2M1P5 1343 aa10.86□□□□□ -0.67
PNKP-229ENST00000637897 SMG6Q86US8 1419 aaKnown RBP10.86□□□□□ -0.67
PNKP-229ENST00000637897 IFFO2Q5TF58 517 aa10.86□□□□□ -0.67
PNKP-229ENST00000637897 SPON1Q9HCB6 807 aa10.86□□□□□ -0.67
PNKP-229ENST00000637897 ATF5Q9Y2D1 282 aaPredicted RBP10.86□□□□□ -0.67
PNKP-229ENST00000637897 COL24A1Q17RW2 1714 aa10.85□□□□□ -0.67
PNKP-229ENST00000637897 PER1O15534 1290 aaPredicted RBP10.85□□□□□ -0.67
PNKP-229ENST00000637897 TNNT2P45379 298 aaPredicted RBP10.85□□□□□ -0.67
PNKP-229ENST00000637897 AMER1Q5JTC6 1135 aaPredicted RBP10.85□□□□□ -0.67
PNKP-229ENST00000637897 AMIGO3Q86WK7 504 aa10.85□□□□□ -0.67
PNKP-229ENST00000637897 PNPLA7Q6ZV29 1317 aa10.84□□□□□ -0.67
PNKP-229ENST00000637897 ITGB4P16144 1822 aa10.84□□□□□ -0.67
PNKP-229ENST00000637897 PPM1GO15355 546 aaPredicted RBP10.84□□□□□ -0.67
PNKP-229ENST00000637897 TATP17735 454 aaPredicted RBP10.84□□□□□ -0.67
PNKP-229ENST00000637897 NKX1-1Q15270 411 aaPredicted RBP10.84□□□□□ -0.67
PNKP-229ENST00000637897 STK32BQ9NY57 414 aa10.84□□□□□ -0.67
PNKP-229ENST00000637897 RAPGEF4Q8WZA2 1011 aa10.83□□□□□ -0.68
PNKP-229ENST00000637897 SYTL4Q96C24 671 aaPredicted RBP10.83□□□□□ -0.68
PNKP-229ENST00000637897 QSER1Q2KHR3 1735 aa10.83□□□□□ -0.68
PNKP-229ENST00000637897 IGSF1Q8N6C5 1336 aa10.83□□□□□ -0.68
PNKP-229ENST00000637897 SLC27A3Q5K4L6 730 aa10.82□□□□□ -0.68
PNKP-229ENST00000637897 SMIM5Q71RC9 77 aa10.82□□□□□ -0.68
PNKP-229ENST00000637897 AEBP1Q8IUX7 1158 aa10.82□□□□□ -0.68
PNKP-229ENST00000637897 PIGBQ92521 554 aa10.82□□□□□ -0.68
PNKP-229ENST00000637897 PCDH11XQ9BZA7 1347 aa10.82□□□□□ -0.68
PNKP-229ENST00000637897 PCDH11YQ9BZA8 1340 aa10.82□□□□□ -0.68
PNKP-229ENST00000637897 TAF1LQ8IZX4 1826 aa10.81□□□□□ -0.68
PNKP-229ENST00000637897 PHKG2P15735 406 aa10.8□□□□□ -0.68
PNKP-229ENST00000637897 MTFR1LQ9H019 292 aa10.8□□□□□ -0.68
PNKP-229ENST00000637897 IL13P35225 146 aa10.79□□□□□ -0.68
PNKP-229ENST00000637897 MPRIPQ6WCQ1 1025 aa10.79□□□□□ -0.68
PNKP-229ENST00000637897 COL23A1Q86Y22 540 aaPredicted RBP10.79□□□□□ -0.68
PNKP-229ENST00000637897 SLC4A9Q96Q91 983 aa10.79□□□□□ -0.68
PNKP-229ENST00000637897 SYT17Q9BSW7 474 aa10.79□□□□□ -0.68
PNKP-229ENST00000637897 FHDC1Q9C0D6 1143 aaPredicted RBP10.79□□□□□ -0.68
PNKP-229ENST00000637897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.79□□□□□ -0.68
PNKP-229ENST00000637897 CCNL1Q9UK58 526 aaPredicted RBP10.79□□□□□ -0.68
PNKP-229ENST00000637897 PALLDQ8WX93 1383 aa10.78□□□□□ -0.68
PNKP-229ENST00000637897 KDM6AO15550 1401 aaPredicted RBP10.78□□□□□ -0.68
PNKP-229ENST00000637897 ASAP1Q9ULH1 1129 aa10.78□□□□□ -0.68
PNKP-229ENST00000637897 C5P01031 1676 aa10.78□□□□□ -0.68
PNKP-229ENST00000637897 ITPK1Q13572 414 aa10.77□□□□□ -0.69
PNKP-229ENST00000637897 MORC1Q86VD1 984 aa10.77□□□□□ -0.69
PNKP-229ENST00000637897 ATG3Q9NT62 314 aa10.77□□□□□ -0.69
PNKP-229ENST00000637897 KDRP35968 1356 aa10.77□□□□□ -0.69
PNKP-229ENST00000637897 GOLGB1Q14789 3259 aaKnown RBP10.76□□□□□ -0.69
PNKP-229ENST00000637897 LINC00116Q8NCU8 138 aa10.76□□□□□ -0.69
PNKP-229ENST00000637897 PPP1R1BQ9UD71 204 aaPredicted RBP10.76□□□□□ -0.69
PNKP-229ENST00000637897 UBR3Q6ZT12 1888 aa10.76□□□□□ -0.69
PNKP-229ENST00000637897 C4BP0C0L5 1744 aa10.75□□□□□ -0.69
PNKP-229ENST00000637897 COL3A1P02461 1466 aaPredicted RBP10.75□□□□□ -0.69
PNKP-229ENST00000637897 IFNL2Q8IZJ0 200 aa10.75□□□□□ -0.69
PNKP-229ENST00000637897 ARXQ96QS3 562 aa10.75□□□□□ -0.69
PNKP-229ENST00000637897 TFCP2L1Q9NZI6 479 aa10.75□□□□□ -0.69
PNKP-229ENST00000637897 SPG7Q9UQ90 795 aa10.75□□□□□ -0.69
PNKP-229ENST00000637897 KNSTRNQ9Y448 316 aa10.75□□□□□ -0.69
PNKP-229ENST00000637897 MAP3K5Q99683 1374 aa10.75□□□□□ -0.69
PNKP-229ENST00000637897 YY1P25490 414 aa10.74□□□□□ -0.69
PNKP-229ENST00000637897 MTHFSP49914 203 aa10.74□□□□□ -0.69
PNKP-229ENST00000637897 SLC16A10Q8TF71 515 aa10.74□□□□□ -0.69
PNKP-229ENST00000637897 PLEKHG2Q9H7P9 1386 aa10.74□□□□□ -0.69
PNKP-229ENST00000637897 LOC102724428A0A0B4J2F2 783 aa10.73□□□□□ -0.69
PNKP-229ENST00000637897 SIK1P57059 783 aa10.73□□□□□ -0.69
PNKP-229ENST00000637897 CC2D1BQ5T0F9 858 aaKnown RBP10.73□□□□□ -0.69
PNKP-229ENST00000637897 MSL1Q68DK7 614 aa10.73□□□□□ -0.69
PNKP-229ENST00000637897 SULT6B1Q6IMI4 303 aa10.73□□□□□ -0.69
PNKP-229ENST00000637897 NLGN2Q8NFZ4 835 aa10.73□□□□□ -0.69
PNKP-229ENST00000637897 MYH14Q7Z406 1995 aaKnown RBP10.72□□□□□ -0.69
PNKP-229ENST00000637897 NPC1L1Q9UHC9 1359 aa10.72□□□□□ -0.69
PNKP-229ENST00000637897 ZNF530Q6P9A1 599 aaPredicted RBP10.71□□□□□ -0.69
PNKP-229ENST00000637897 TMOD3Q9NYL9 352 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms