RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 BAG6P46379 1132 aa13.3□□□□□ -0.28
CLN3-261ENST00000637686 EN1Q05925 392 aaPredicted RBP13.3□□□□□ -0.28
CLN3-261ENST00000637686 PTF1AQ7RTS3 328 aa13.3□□□□□ -0.28
CLN3-261ENST00000637686 BCL9O00512 1426 aa13.3□□□□□ -0.28
CLN3-261ENST00000637686 PPP2R1AP30153 589 aa13.29□□□□□ -0.28
CLN3-261ENST00000637686 ACSBG1Q96GR2 724 aa13.29□□□□□ -0.28
CLN3-261ENST00000637686 TNS1Q9HBL0 1735 aaKnown RBP13.29□□□□□ -0.28
CLN3-261ENST00000637686 SBF2Q86WG5 1849 aa13.29□□□□□ -0.28
CLN3-261ENST00000637686 SHANK3Q9BYB0 1731 aa13.28□□□□□ -0.28
CLN3-261ENST00000637686 KCNQ2O43526 872 aa13.28□□□□□ -0.28
CLN3-261ENST00000637686 DIAPH1O60610 1272 aaKnown RBP13.28□□□□□ -0.28
CLN3-261ENST00000637686 AEBP1Q8IUX7 1158 aa13.28□□□□□ -0.28
CLN3-261ENST00000637686 BCL11BQ9C0K0 894 aaPredicted RBP13.28□□□□□ -0.28
CLN3-261ENST00000637686 SULT6B1Q6IMI4 303 aa13.27□□□□□ -0.29
CLN3-261ENST00000637686 SPG7Q9UQ90 795 aa13.27□□□□□ -0.29
CLN3-261ENST00000637686 EZH2Q15910 746 aaKnown RBP13.26□□□□□ -0.29
CLN3-261ENST00000637686 PARD3Q8TEW0 1356 aa13.26□□□□□ -0.29
CLN3-261ENST00000637686 PCDH11XQ9BZA7 1347 aa13.26□□□□□ -0.29
CLN3-261ENST00000637686 PCDH11YQ9BZA8 1340 aa13.26□□□□□ -0.29
CLN3-261ENST00000637686 COL3A1P02461 1466 aaPredicted RBP13.25□□□□□ -0.29
CLN3-261ENST00000637686 CYP27B1O15528 508 aa13.25□□□□□ -0.29
CLN3-261ENST00000637686 ANP32CO43423 234 aa13.25□□□□□ -0.29
CLN3-261ENST00000637686 HMOX1P09601 288 aa13.25□□□□□ -0.29
CLN3-261ENST00000637686 CFAP53Q96M91 514 aa13.25□□□□□ -0.29
CLN3-261ENST00000637686 CAMKK2Q96RR4 588 aa13.25□□□□□ -0.29
CLN3-261ENST00000637686 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.25□□□□□ -0.29
CLN3-261ENST00000637686 PKD1L3Q7Z443 1732 aa13.25□□□□□ -0.29
CLN3-261ENST00000637686 KAT6BQ8WYB5 2073 aa13.24□□□□□ -0.29
CLN3-261ENST00000637686 PRIM1P49642 420 aaKnown RBP13.24□□□□□ -0.29
CLN3-261ENST00000637686 KDRP35968 1356 aa13.23□□□□□ -0.29
CLN3-261ENST00000637686 U2SURPO15042 1029 aaKnown RBP13.23□□□□□ -0.29
CLN3-261ENST00000637686 RALBP1Q15311 655 aa13.23□□□□□ -0.29
CLN3-261ENST00000637686 PLEKHO1Q53GL0 409 aaPredicted RBP13.23□□□□□ -0.29
CLN3-261ENST00000637686 SYTL4Q96C24 671 aaPredicted RBP13.23□□□□□ -0.29
CLN3-261ENST00000637686 NHSQ6T4R5 1651 aa13.23□□□□□ -0.29
CLN3-261ENST00000637686 PLSCR1O15162 318 aa13.22□□□□□ -0.29
CLN3-261ENST00000637686 PHKG2P15735 406 aa13.22□□□□□ -0.29
CLN3-261ENST00000637686 IFNL2Q8IZJ0 200 aa13.22□□□□□ -0.29
CLN3-261ENST00000637686 PRKRIP1Q9H875 184 aaPredicted RBP13.22□□□□□ -0.29
CLN3-261ENST00000637686 CCER2I3L3R5 266 aa13.21□□□□□ -0.29
CLN3-261ENST00000637686 NKX1-1Q15270 411 aaPredicted RBP13.21□□□□□ -0.29
CLN3-261ENST00000637686 AMOTQ4VCS5 1084 aa13.21□□□□□ -0.29
CLN3-261ENST00000637686 NUDCQ9Y266 331 aa13.21□□□□□ -0.29
CLN3-261ENST00000637686 DOT1LQ8TEK3 1739 aa13.21□□□□□ -0.3
CLN3-261ENST00000637686 PLEKHG2Q9H7P9 1386 aa13.2□□□□□ -0.3
CLN3-261ENST00000637686 ZNF530Q6P9A1 599 aaPredicted RBP13.2□□□□□ -0.3
CLN3-261ENST00000637686 BTAF1O14981 1849 aa13.19□□□□□ -0.3
CLN3-261ENST00000637686 PROM2Q8N271 834 aa13.19□□□□□ -0.3
CLN3-261ENST00000637686 U2AF1L5P0DN76 240 aaPredicted RBP13.18□□□□□ -0.3
CLN3-261ENST00000637686 U2AF1Q01081 240 aaKnown RBP eCLIP13.18□□□□□ -0.3
CLN3-261ENST00000637686 TXNRD1Q16881 649 aa13.18□□□□□ -0.3
CLN3-261ENST00000637686 C1orf141Q5JVX7 400 aa13.18□□□□□ -0.3
CLN3-261ENST00000637686 MPRIPQ6WCQ1 1025 aa13.18□□□□□ -0.3
CLN3-261ENST00000637686 TOGARAM1Q9Y4F4 1720 aa13.17□□□□□ -0.3
CLN3-261ENST00000637686 HSP90AB1P08238 724 aaKnown RBP13.17□□□□□ -0.3
CLN3-261ENST00000637686 RREB1Q92766 1687 aa13.17□□□□□ -0.3
CLN3-261ENST00000637686 RGPD3A6NKT7 1758 aaPredicted RBP13.17□□□□□ -0.3
CLN3-261ENST00000637686 RGPD4Q7Z3J3 1758 aa13.17□□□□□ -0.3
CLN3-261ENST00000637686 MYBBP1AQ9BQG0 1328 aaKnown RBP13.16□□□□□ -0.3
CLN3-261ENST00000637686 MTHFSDQ2M296 383 aaKnown RBP13.16□□□□□ -0.3
CLN3-261ENST00000637686 MIER1Q8N108 512 aa13.16□□□□□ -0.3
CLN3-261ENST00000637686 DCAF5Q96JK2 942 aa13.16□□□□□ -0.3
CLN3-261ENST00000637686 RSPH6AQ9H0K4 717 aa13.16□□□□□ -0.3
CLN3-261ENST00000637686 PSDA5PKW4 1024 aaPredicted RBP13.15□□□□□ -0.3
CLN3-261ENST00000637686 PRKAR2BP31323 418 aa13.15□□□□□ -0.3
CLN3-261ENST00000637686 AKAP4Q5JQC9 854 aa13.15□□□□□ -0.3
CLN3-261ENST00000637686 NBPF14Q5TI25 921 aa13.15□□□□□ -0.3
CLN3-261ENST00000637686 PIGBQ92521 554 aa13.15□□□□□ -0.3
CLN3-261ENST00000637686 TMOD3Q9NYL9 352 aa13.15□□□□□ -0.3
CLN3-261ENST00000637686 NUP188Q5SRE5 1749 aa13.15□□□□□ -0.3
CLN3-261ENST00000637686 ITGB4P16144 1822 aa13.15□□□□□ -0.3
CLN3-261ENST00000637686 R3HDM1Q15032 1099 aaKnown RBP13.14□□□□□ -0.31
CLN3-261ENST00000637686 PHACTR3Q96KR7 559 aa13.14□□□□□ -0.31
CLN3-261ENST00000637686 KDM6AO15550 1401 aaPredicted RBP13.13□□□□□ -0.31
CLN3-261ENST00000637686 ERVV-2B6SEH9 535 aa13.13□□□□□ -0.31
CLN3-261ENST00000637686 FCHSD2O94868 740 aa13.13□□□□□ -0.31
CLN3-261ENST00000637686 LRRC4BQ9NT99 713 aa13.13□□□□□ -0.31
CLN3-261ENST00000637686 KCNQ4P56696 695 aa13.12□□□□□ -0.31
CLN3-261ENST00000637686 CABP4P57796 275 aa13.12□□□□□ -0.31
CLN3-261ENST00000637686 SLC27A3Q5K4L6 730 aa13.12□□□□□ -0.31
CLN3-261ENST00000637686 GAS2L2Q8NHY3 880 aa13.12□□□□□ -0.31
CLN3-261ENST00000637686 LGR6Q9HBX8 967 aa13.12□□□□□ -0.31
CLN3-261ENST00000637686 ANO8Q9HCE9 1232 aaPredicted RBP13.12□□□□□ -0.31
CLN3-261ENST00000637686 RNMTO43148 476 aaKnown RBP13.11□□□□□ -0.31
CLN3-261ENST00000637686 SMARCC1Q92922 1105 aaPredicted RBP13.11□□□□□ -0.31
CLN3-261ENST00000637686 ATG3Q9NT62 314 aa13.11□□□□□ -0.31
CLN3-261ENST00000637686 CCNL1Q9UK58 526 aaPredicted RBP13.11□□□□□ -0.31
CLN3-261ENST00000637686 ASAP1Q9ULH1 1129 aa13.11□□□□□ -0.31
CLN3-261ENST00000637686 PALLDQ8WX93 1383 aa13.1□□□□□ -0.31
CLN3-261ENST00000637686 NFATC2IPQ8NCF5 419 aa13.1□□□□□ -0.31
CLN3-261ENST00000637686 LY75O60449 1722 aa13.1□□□□□ -0.31
CLN3-261ENST00000637686 GNAT3A8MTJ3 354 aa13.09□□□□□ -0.31
CLN3-261ENST00000637686 PLEKHF1Q96S99 279 aa13.09□□□□□ -0.31
CLN3-261ENST00000637686 SLC52A2Q9HAB3 445 aa13.09□□□□□ -0.31
CLN3-261ENST00000637686 STK32BQ9NY57 414 aa13.09□□□□□ -0.31
CLN3-261ENST00000637686 SCN11AQ9UI33 1791 aa13.09□□□□□ -0.31
CLN3-261ENST00000637686 MAP3K5Q99683 1374 aa13.08□□□□□ -0.31
CLN3-261ENST00000637686 SLC15A2Q16348 729 aa13.08□□□□□ -0.32
CLN3-261ENST00000637686 LOC102724428A0A0B4J2F2 783 aa13.07□□□□□ -0.32
CLN3-261ENST00000637686 NEFMP07197 916 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms