RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 ZNF827Q17R98 1081 aa16.14■□□□□ 0.17
CLN3-257ENST00000637110 ACSBG1Q96GR2 724 aa16.14■□□□□ 0.17
CLN3-257ENST00000637110 ATP10DQ9P241 1426 aa16.13■□□□□ 0.17
CLN3-257ENST00000637110 GPBP1L1Q9HC44 474 aaPredicted RBP16.13■□□□□ 0.17
CLN3-257ENST00000637110 NFAT5O94916 1531 aa16.12■□□□□ 0.17
CLN3-257ENST00000637110 HSPA5P11021 654 aaKnown RBP16.11■□□□□ 0.17
CLN3-257ENST00000637110 SLC27A3Q5K4L6 730 aa16.11■□□□□ 0.17
CLN3-257ENST00000637110 NLGN2Q8NFZ4 835 aa16.11■□□□□ 0.17
CLN3-257ENST00000637110 AKT1S1Q96B36 256 aa16.1■□□□□ 0.17
CLN3-257ENST00000637110 LTV1Q96GA3 475 aaPredicted RBP16.1■□□□□ 0.17
CLN3-257ENST00000637110 GGNBP2Q9H3C7 697 aa16.1■□□□□ 0.17
CLN3-257ENST00000637110 NLRP2Q9NX02 1062 aa16.1■□□□□ 0.17
CLN3-257ENST00000637110 YBX3P16989 372 aaKnown RBP eCLIP16.09■□□□□ 0.17
CLN3-257ENST00000637110 LRRC4BQ9NT99 713 aa16.09■□□□□ 0.17
CLN3-257ENST00000637110 TFCP2L1Q9NZI6 479 aa16.09■□□□□ 0.17
CLN3-257ENST00000637110 AMPHP49418 695 aa16.08■□□□□ 0.16
CLN3-257ENST00000637110 ANKRD24Q8TF21 1146 aa16.08■□□□□ 0.16
CLN3-257ENST00000637110 PNPLA7Q6ZV29 1317 aa16.08■□□□□ 0.16
CLN3-257ENST00000637110 FYB1O15117 783 aa16.07■□□□□ 0.16
CLN3-257ENST00000637110 FBLN1P23142 703 aa16.07■□□□□ 0.16
CLN3-257ENST00000637110 USP54Q70EL1 1684 aa16.07■□□□□ 0.16
CLN3-257ENST00000637110 LTN1O94822 1766 aa16.07■□□□□ 0.16
CLN3-257ENST00000637110 TUBGCP6Q96RT7 1819 aa16.07■□□□□ 0.16
CLN3-257ENST00000637110 IL2RBP14784 551 aa16.06■□□□□ 0.16
CLN3-257ENST00000637110 ERBB3P21860 1342 aa16.05■□□□□ 0.16
CLN3-257ENST00000637110 IP6K1Q92551 441 aa16.05■□□□□ 0.16
CLN3-257ENST00000637110 NSD3Q9BZ95 1437 aa16.04■□□□□ 0.16
CLN3-257ENST00000637110 MAP3K19Q56UN5 1328 aa16.04■□□□□ 0.16
CLN3-257ENST00000637110 CARD14Q9BXL6 1004 aa16.04■□□□□ 0.16
CLN3-257ENST00000637110 RRS1Q15050 365 aaKnown RBP16.03■□□□□ 0.16
CLN3-257ENST00000637110 ZNF526Q8TF50 670 aaPredicted RBP16.03■□□□□ 0.16
CLN3-257ENST00000637110 ADCY9O60503 1353 aa16.02■□□□□ 0.16
CLN3-257ENST00000637110 HOXC9P31274 260 aa16.02■□□□□ 0.16
CLN3-257ENST00000637110 MSH5O43196 834 aa16.01■□□□□ 0.15
CLN3-257ENST00000637110 CGNL1Q0VF96 1302 aa16■□□□□ 0.15
CLN3-257ENST00000637110 APLP1P51693 650 aa16■□□□□ 0.15
CLN3-257ENST00000637110 CD2APQ9Y5K6 639 aa16■□□□□ 0.15
CLN3-257ENST00000637110 KIF20BQ96Q89 1820 aa16■□□□□ 0.15
CLN3-257ENST00000637110 PPM1GO15355 546 aaPredicted RBP15.99■□□□□ 0.15
CLN3-257ENST00000637110 LY75O60449 1722 aa15.99■□□□□ 0.15
CLN3-257ENST00000637110 PANK3Q9H999 370 aa15.98■□□□□ 0.15
CLN3-257ENST00000637110 SYTL4Q96C24 671 aaPredicted RBP15.97■□□□□ 0.15
CLN3-257ENST00000637110 SMG6Q86US8 1419 aaKnown RBP15.96■□□□□ 0.15
CLN3-257ENST00000637110 HMGB2P26583 209 aaKnown RBP15.96■□□□□ 0.15
CLN3-257ENST00000637110 TNNT2P45379 298 aaPredicted RBP15.96■□□□□ 0.15
CLN3-257ENST00000637110 DDX54Q8TDD1 881 aaKnown RBP15.96■□□□□ 0.15
CLN3-257ENST00000637110 RTL1A6NKG5 1358 aa15.96■□□□□ 0.15
CLN3-257ENST00000637110 KCNQ4P56696 695 aa15.95■□□□□ 0.14
CLN3-257ENST00000637110 HSP90AB2PQ58FF8 381 aa15.95■□□□□ 0.14
CLN3-257ENST00000637110 CCNL1Q9UK58 526 aaPredicted RBP15.95■□□□□ 0.14
CLN3-257ENST00000637110 DOT1LQ8TEK3 1739 aa15.94■□□□□ 0.14
CLN3-257ENST00000637110 MSL1Q68DK7 614 aa15.94■□□□□ 0.14
CLN3-257ENST00000637110 COL23A1Q86Y22 540 aaPredicted RBP15.94■□□□□ 0.14
CLN3-257ENST00000637110 EMILIN1Q9Y6C2 1016 aa15.94■□□□□ 0.14
CLN3-257ENST00000637110 FLT4P35916 1363 aa15.93■□□□□ 0.14
CLN3-257ENST00000637110 KIF3CO14782 793 aa15.93■□□□□ 0.14
CLN3-257ENST00000637110 PRIM1P49642 420 aaKnown RBP15.93■□□□□ 0.14
CLN3-257ENST00000637110 USHBP1Q8N6Y0 703 aa15.93■□□□□ 0.14
CLN3-257ENST00000637110 FAM208AQ9UK61 1670 aaKnown RBP15.92■□□□□ 0.14
CLN3-257ENST00000637110 NBPF6Q5VWK0 638 aa15.92■□□□□ 0.14
CLN3-257ENST00000637110 FLAD1Q8NFF5 587 aa15.92■□□□□ 0.14
CLN3-257ENST00000637110 RAPGEF4Q8WZA2 1011 aa15.92■□□□□ 0.14
CLN3-257ENST00000637110 NBPF4Q96M43 638 aa15.92■□□□□ 0.14
CLN3-257ENST00000637110 INSRP06213 1382 aa15.91■□□□□ 0.14
CLN3-257ENST00000637110 KNSTRNQ9Y448 316 aa15.91■□□□□ 0.14
CLN3-257ENST00000637110 TOMM70O94826 608 aa15.9■□□□□ 0.14
CLN3-257ENST00000637110 MORC1Q86VD1 984 aa15.9■□□□□ 0.14
CLN3-257ENST00000637110 DNAJC5GQ8N7S2 189 aa15.9■□□□□ 0.14
CLN3-257ENST00000637110 ZCRB1Q8TBF4 217 aaKnown RBP15.9■□□□□ 0.14
CLN3-257ENST00000637110 KIF7Q2M1P5 1343 aa15.9■□□□□ 0.14
CLN3-257ENST00000637110 RGPD2P0DJD1 1756 aa15.9■□□□□ 0.14
CLN3-257ENST00000637110 KIF24Q5T7B8 1368 aa15.89■□□□□ 0.13
CLN3-257ENST00000637110 TATP17735 454 aaPredicted RBP15.89■□□□□ 0.13
CLN3-257ENST00000637110 IGSF1Q8N6C5 1336 aa15.89■□□□□ 0.13
CLN3-257ENST00000637110 C5P01031 1676 aa15.89■□□□□ 0.13
CLN3-257ENST00000637110 NSD2O96028 1365 aa15.88■□□□□ 0.13
CLN3-257ENST00000637110 POLKQ9UBT6 870 aa15.88■□□□□ 0.13
CLN3-257ENST00000637110 MAP2P11137 1827 aaKnown RBP15.87■□□□□ 0.13
CLN3-257ENST00000637110 WDR90Q96KV7 1748 aa15.86■□□□□ 0.13
CLN3-257ENST00000637110 CAPN15O75808 1086 aa15.86■□□□□ 0.13
CLN3-257ENST00000637110 WASHC2AQ641Q2 1341 aa15.86■□□□□ 0.13
CLN3-257ENST00000637110 CNGB1Q14028 1251 aaPredicted RBP15.85■□□□□ 0.13
CLN3-257ENST00000637110 MEGF6O75095 1541 aa15.84■□□□□ 0.13
CLN3-257ENST00000637110 CICQ96RK0 1608 aaPredicted RBP15.84■□□□□ 0.13
CLN3-257ENST00000637110 COL13A1Q5TAT6 717 aaPredicted RBP15.84■□□□□ 0.13
CLN3-257ENST00000637110 TAF1LQ8IZX4 1826 aa15.84■□□□□ 0.13
CLN3-257ENST00000637110 ANKRD26Q9UPS8 1709 aa15.83■□□□□ 0.13
CLN3-257ENST00000637110 PRELPP51888 382 aa15.83■□□□□ 0.12
CLN3-257ENST00000637110 TNS4Q8IZW8 715 aa15.83■□□□□ 0.12
CLN3-257ENST00000637110 WWC3Q9ULE0 1092 aa15.83■□□□□ 0.12
CLN3-257ENST00000637110 KLRG1Q96E93 195 aa15.82■□□□□ 0.12
CLN3-257ENST00000637110 EYA1Q99502 592 aa15.82■□□□□ 0.12
CLN3-257ENST00000637110 EIF4A2Q14240 407 aaKnown RBP15.81■□□□□ 0.12
CLN3-257ENST00000637110 C16orf71Q8IYS4 520 aaPredicted RBP15.81■□□□□ 0.12
CLN3-257ENST00000637110 JMYQ8N9B5 988 aa15.81■□□□□ 0.12
CLN3-257ENST00000637110 RBM46Q8TBY0 533 aaKnown RBP15.81■□□□□ 0.12
CLN3-257ENST00000637110 AK7Q96M32 723 aa15.81■□□□□ 0.12
CLN3-257ENST00000637110 PCDH11XQ9BZA7 1347 aa15.81■□□□□ 0.12
CLN3-257ENST00000637110 PCDH11YQ9BZA8 1340 aa15.81■□□□□ 0.12
CLN3-257ENST00000637110 CC2D1BQ5T0F9 858 aaKnown RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms