RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PLEKHO1Q53GL0 409 aaPredicted RBP23.95■■□□□ 1.42
CLN3-254ENST00000637050 TSR2Q969E8 191 aaKnown RBP23.95■■□□□ 1.42
CLN3-254ENST00000637050 MAP3K5Q99683 1374 aa23.94■■□□□ 1.42
CLN3-254ENST00000637050 GNAT3A8MTJ3 354 aa23.94■■□□□ 1.42
CLN3-254ENST00000637050 MCM10Q7L590 875 aa23.94■■□□□ 1.42
CLN3-254ENST00000637050 FKBP8Q14318 412 aa23.93■■□□□ 1.42
CLN3-254ENST00000637050 RTF1Q92541 710 aaKnown RBP23.93■■□□□ 1.42
CLN3-254ENST00000637050 CFAP44Q96MT7 982 aa23.93■■□□□ 1.42
CLN3-254ENST00000637050 CRB1P82279 1406 aa23.92■■□□□ 1.42
CLN3-254ENST00000637050 RAPGEF4Q8WZA2 1011 aa23.92■■□□□ 1.42
CLN3-254ENST00000637050 LRRC37A3O60309 1634 aa23.91■■□□□ 1.42
CLN3-254ENST00000637050 MEGF6O75095 1541 aa23.9■■□□□ 1.42
CLN3-254ENST00000637050 CT47B1P0C2W7 299 aaPredicted RBP23.9■■□□□ 1.42
CLN3-254ENST00000637050 RRP1P56182 461 aaKnown RBP23.9■■□□□ 1.42
CLN3-254ENST00000637050 TOM1L2Q6ZVM7 507 aa23.9■■□□□ 1.42
CLN3-254ENST00000637050 LAS1LQ9Y4W2 734 aaKnown RBP23.9■■□□□ 1.42
CLN3-254ENST00000637050 TATP17735 454 aaPredicted RBP23.89■■□□□ 1.41
CLN3-254ENST00000637050 EVA1CP58658 441 aa23.89■■□□□ 1.41
CLN3-254ENST00000637050 EXOSC9Q06265 439 aaKnown RBP23.89■■□□□ 1.41
CLN3-254ENST00000637050 AKAP4Q5JQC9 854 aa23.89■■□□□ 1.41
CLN3-254ENST00000637050 ZNF530Q6P9A1 599 aaPredicted RBP23.89■■□□□ 1.41
CLN3-254ENST00000637050 CARD10Q9BWT7 1032 aa23.89■■□□□ 1.41
CLN3-254ENST00000637050 MBIPQ9NS73 344 aa23.89■■□□□ 1.41
CLN3-254ENST00000637050 BTG4Q9NY30 223 aa23.89■■□□□ 1.41
CLN3-254ENST00000637050 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.89■■□□□ 1.41
CLN3-254ENST00000637050 JCADQ9P266 1359 aa23.89■■□□□ 1.41
CLN3-254ENST00000637050 LARP1Q6PKG0 1096 aaKnown RBP23.88■■□□□ 1.41
CLN3-254ENST00000637050 CHL1O00533 1208 aa23.87■■□□□ 1.41
CLN3-254ENST00000637050 IL17REQ8NFR9 667 aa23.87■■□□□ 1.41
CLN3-254ENST00000637050 STRN4Q9NRL3 753 aa23.87■■□□□ 1.41
CLN3-254ENST00000637050 CEMIPQ8WUJ3 1361 aa23.86■■□□□ 1.41
CLN3-254ENST00000637050 IRX6P78412 446 aaPredicted RBP23.86■■□□□ 1.41
CLN3-254ENST00000637050 PKD1L3Q7Z443 1732 aa23.86■■□□□ 1.41
CLN3-254ENST00000637050 OVOS2A0A0G2JMS6 1433 aa23.84■■□□□ 1.41
CLN3-254ENST00000637050 PLCH1Q4KWH8 1693 aa23.84■■□□□ 1.41
CLN3-254ENST00000637050 ADAMTS2O95450 1211 aa23.84■■□□□ 1.41
CLN3-254ENST00000637050 C1orf141Q5JVX7 400 aa23.84■■□□□ 1.41
CLN3-254ENST00000637050 SPG7Q9UQ90 795 aa23.84■■□□□ 1.41
CLN3-254ENST00000637050 PARP4Q9UKK3 1724 aaKnown RBP23.84■■□□□ 1.41
CLN3-254ENST00000637050 NUTM2BA6NNL0 878 aaPredicted RBP23.83■■□□□ 1.41
CLN3-254ENST00000637050 NUTM2EB1AL46 878 aaPredicted RBP23.83■■□□□ 1.41
CLN3-254ENST00000637050 RARSP54136 660 aaKnown RBP23.83■■□□□ 1.41
CLN3-254ENST00000637050 NUTM2AQ8IVF1 878 aaPredicted RBP23.83■■□□□ 1.41
CLN3-254ENST00000637050 ERICH6BQ5W0A0 696 aa23.82■■□□□ 1.4
CLN3-254ENST00000637050 ADAMTS7Q9UKP4 1686 aa23.81■■□□□ 1.4
CLN3-254ENST00000637050 BCAR3O75815 825 aa23.81■■□□□ 1.4
CLN3-254ENST00000637050 NRAPQ86VF7 1730 aa23.8■■□□□ 1.4
CLN3-254ENST00000637050 LGR6Q9HBX8 967 aa23.8■■□□□ 1.4
CLN3-254ENST00000637050 BABAM1Q9NWV8 329 aa23.8■■□□□ 1.4
CLN3-254ENST00000637050 RNMTO43148 476 aaKnown RBP23.79■■□□□ 1.4
CLN3-254ENST00000637050 PLIN1O60240 522 aa23.79■■□□□ 1.4
CLN3-254ENST00000637050 IL2RBP14784 551 aa23.79■■□□□ 1.4
CLN3-254ENST00000637050 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.79■■□□□ 1.4
CLN3-254ENST00000637050 ZNF428Q96B54 188 aa23.79■■□□□ 1.4
CLN3-254ENST00000637050 SPATA31A6Q5VVP1 1343 aa23.78■■□□□ 1.4
CLN3-254ENST00000637050 NWD2Q9ULI1 1742 aa23.78■■□□□ 1.4
CLN3-254ENST00000637050 PHKG2P15735 406 aa23.78■■□□□ 1.4
CLN3-254ENST00000637050 TAF7Q15545 349 aaPredicted RBP23.78■■□□□ 1.4
CLN3-254ENST00000637050 MPRIPQ6WCQ1 1025 aa23.78■■□□□ 1.4
CLN3-254ENST00000637050 SLIT2O94813 1529 aa23.78■■□□□ 1.4
CLN3-254ENST00000637050 HSPA1LP34931 641 aa23.77■■□□□ 1.4
CLN3-254ENST00000637050 IFNL2Q8IZJ0 200 aa23.77■■□□□ 1.4
CLN3-254ENST00000637050 TSPYL4Q9UJ04 414 aa23.77■■□□□ 1.4
CLN3-254ENST00000637050 VIRMAQ69YN4 1812 aaKnown RBP23.77■■□□□ 1.4
CLN3-254ENST00000637050 VAMP4O75379 141 aa23.76■■□□□ 1.39
CLN3-254ENST00000637050 TSPYL6Q8N831 410 aa23.76■■□□□ 1.39
CLN3-254ENST00000637050 C8orf58Q8NAV2 365 aa23.76■■□□□ 1.39
CLN3-254ENST00000637050 MIS18AQ9NYP9 233 aa23.76■■□□□ 1.39
CLN3-254ENST00000637050 CYP27B1O15528 508 aa23.75■■□□□ 1.39
CLN3-254ENST00000637050 ZCRB1Q8TBF4 217 aaKnown RBP23.75■■□□□ 1.39
CLN3-254ENST00000637050 TWISTNBQ3B726 338 aaPredicted RBP23.74■■□□□ 1.39
CLN3-254ENST00000637050 DISP2A7MBM2 1401 aa23.74■■□□□ 1.39
CLN3-254ENST00000637050 KDM6AO15550 1401 aaPredicted RBP23.74■■□□□ 1.39
CLN3-254ENST00000637050 ALDH1L2Q3SY69 923 aa23.73■■□□□ 1.39
CLN3-254ENST00000637050 USP35Q9P2H5 1018 aa23.73■■□□□ 1.39
CLN3-254ENST00000637050 SCN11AQ9UI33 1791 aa23.73■■□□□ 1.39
CLN3-254ENST00000637050 TEFQ10587 303 aa23.73■■□□□ 1.39
CLN3-254ENST00000637050 SSH1Q8WYL5 1049 aa23.73■■□□□ 1.39
CLN3-254ENST00000637050 PCDH11XQ9BZA7 1347 aa23.72■■□□□ 1.39
CLN3-254ENST00000637050 PCDH11YQ9BZA8 1340 aa23.72■■□□□ 1.39
CLN3-254ENST00000637050 BCL2L13Q9BXK5 485 aa23.72■■□□□ 1.39
CLN3-254ENST00000637050 LRP6O75581 1613 aa23.72■■□□□ 1.39
CLN3-254ENST00000637050 SHANK3Q9BYB0 1731 aa23.71■■□□□ 1.39
CLN3-254ENST00000637050 SIPA1L3O60292 1781 aaPredicted RBP23.71■■□□□ 1.39
CLN3-254ENST00000637050 HSP90AB1P08238 724 aaKnown RBP23.71■■□□□ 1.39
CLN3-254ENST00000637050 ELL2O00472 640 aaPredicted RBP23.7■■□□□ 1.39
CLN3-254ENST00000637050 KRT24Q2M2I5 525 aa23.7■■□□□ 1.39
CLN3-254ENST00000637050 DCAF5Q96JK2 942 aa23.7■■□□□ 1.39
CLN3-254ENST00000637050 SMC4Q9NTJ3 1288 aa23.7■■□□□ 1.39
CLN3-254ENST00000637050 KDM3BQ7LBC6 1761 aa23.7■■□□□ 1.38
CLN3-254ENST00000637050 BRPF1P55201 1214 aaPredicted RBP23.7■■□□□ 1.38
CLN3-254ENST00000637050 C20orf194Q5TEA3 1177 aa23.7■■□□□ 1.38
CLN3-254ENST00000637050 WNK3Q9BYP7 1800 aa23.69■■□□□ 1.38
CLN3-254ENST00000637050 SPATA31A1Q5TZJ5 1347 aa23.69■■□□□ 1.38
CLN3-254ENST00000637050 MRC1P22897 1456 aa23.68■■□□□ 1.38
CLN3-254ENST00000637050 THRAP3Q9Y2W1 955 aaKnown RBP23.68■■□□□ 1.38
CLN3-254ENST00000637050 NKX1-1Q15270 411 aaPredicted RBP23.67■■□□□ 1.38
CLN3-254ENST00000637050 SPATA31A5Q5VU36 1347 aa23.67■■□□□ 1.38
CLN3-254ENST00000637050 SPATA31A7Q8IWB4 1347 aa23.67■■□□□ 1.38
CLN3-254ENST00000637050 BTBD11A6QL63 1104 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms