RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CALD1Q05682 793 aaKnown RBP5.01□□□□□ -1.61
SCN1A-214ENST00000637038 CCDC27Q2M243 656 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 WWC1Q8IX03 1113 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 RBM46Q8TBY0 533 aaKnown RBP5.01□□□□□ -1.61
SCN1A-214ENST00000637038 PLEKHF1Q96S99 279 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 COG6Q9Y2V7 657 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 ADAMTS2O95450 1211 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 MLLT1Q03111 559 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-214ENST00000637038 NEUROD2Q15784 382 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 HSCBQ8IWL3 235 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 ANTXR1Q9H6X2 564 aa5.01□□□□□ -1.61
SCN1A-214ENST00000637038 A0A0U1RQG5 324 aaPredicted RBP5□□□□□ -1.61
SCN1A-214ENST00000637038 U2AF1L5P0DN76 240 aaPredicted RBP5□□□□□ -1.61
SCN1A-214ENST00000637038 BRD2P25440 801 aaKnown RBP5□□□□□ -1.61
SCN1A-214ENST00000637038 U2AF1Q01081 240 aaKnown RBP eCLIP5□□□□□ -1.61
SCN1A-214ENST00000637038 TERF2IPQ9NYB0 399 aa5□□□□□ -1.61
SCN1A-214ENST00000637038 DDX19BQ9UMR2 479 aa5□□□□□ -1.61
SCN1A-214ENST00000637038 SIPA1L3O60292 1781 aaPredicted RBP5□□□□□ -1.61
SCN1A-214ENST00000637038 ABCC11Q96J66 1382 aa5□□□□□ -1.61
SCN1A-214ENST00000637038 BCAR3O75815 825 aa5□□□□□ -1.61
SCN1A-214ENST00000637038 DDIT3P35638 169 aa5□□□□□ -1.61
SCN1A-214ENST00000637038 TCP11L2Q8N4U5 519 aa5□□□□□ -1.61
SCN1A-214ENST00000637038 SEC24BO95487 1268 aa5□□□□□ -1.61
SCN1A-214ENST00000637038 R3HDM1Q15032 1099 aaKnown RBP5□□□□□ -1.61
SCN1A-214ENST00000637038 DZIP1LQ8IYY4 767 aaKnown RBP5□□□□□ -1.61
SCN1A-214ENST00000637038 KIF16BQ96L93 1317 aa4.99□□□□□ -1.61
SCN1A-214ENST00000637038 TNNT2P45379 298 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-214ENST00000637038 SLC4A3P48751 1232 aa4.99□□□□□ -1.61
SCN1A-214ENST00000637038 CTCFP49711 727 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-214ENST00000637038 RBM10P98175 930 aaKnown RBP4.99□□□□□ -1.61
SCN1A-214ENST00000637038 HDGFL2Q7Z4V5 671 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-214ENST00000637038 PANK1Q8TE04 598 aa4.99□□□□□ -1.61
SCN1A-214ENST00000637038 C14orf93Q9H972 538 aaKnown RBP4.99□□□□□ -1.61
SCN1A-214ENST00000637038 TRAK1Q9UPV9 953 aa4.99□□□□□ -1.61
SCN1A-214ENST00000637038 PHRF1Q9P1Y6 1649 aaKnown RBP4.99□□□□□ -1.61
SCN1A-214ENST00000637038 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.99□□□□□ -1.61
SCN1A-214ENST00000637038 RARSP54136 660 aaKnown RBP4.99□□□□□ -1.61
SCN1A-214ENST00000637038 TPRNQ4KMQ1 711 aa4.99□□□□□ -1.61
SCN1A-214ENST00000637038 SMC4Q9NTJ3 1288 aa4.99□□□□□ -1.61
SCN1A-214ENST00000637038 TNNQ9UQP3 1299 aa4.99□□□□□ -1.61
SCN1A-214ENST00000637038 ADGRL3Q9HAR2 1447 aa4.99□□□□□ -1.61
SCN1A-214ENST00000637038 DDX11L8A8MPP1 907 aa4.99□□□□□ -1.61
SCN1A-214ENST00000637038 APBA3O96018 575 aa4.99□□□□□ -1.61
SCN1A-214ENST00000637038 YTHDC2Q9H6S0 1430 aaKnown RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 GOLGA6L22H0YM25 854 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 CA12O43570 354 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 HSP90AA1P07900 732 aaKnown RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 RLBP1P12271 317 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 MVPQ14764 893 aaKnown RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 BRINP3Q76B58 766 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 ANP32BQ92688 251 aaKnown RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 ADAMTS7Q9UKP4 1686 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 ZC3H4Q9UPT8 1303 aaKnown RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 XIRP1Q702N8 1843 aaKnown RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 CAMTA1Q9Y6Y1 1673 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 U2SURPO15042 1029 aaKnown RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 FAM43AQ8N2R8 423 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 ZNF428Q96B54 188 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 ZNF692Q9BU19 519 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 CHMP5Q9NZZ3 219 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 ISY1Q9ULR0 285 aaKnown RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 CPSF1Q10570 1443 aaKnown RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 IL16Q14005 1332 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 TOMM70O94826 608 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 MTHFSP49914 203 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 ITPRIPQ8IWB1 547 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-214ENST00000637038 PDZRN3Q9UPQ7 1066 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 PIK3C2AO00443 1686 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 ANKRD36BQ8N2N9 1353 aa4.98□□□□□ -1.61
SCN1A-214ENST00000637038 GOLGA6L3A6NEY3 463 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 FRAT2O75474 233 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-214ENST00000637038 SRPK2P78362 688 aaKnown RBP4.97□□□□□ -1.61
SCN1A-214ENST00000637038 GBP4Q96PP9 640 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 POGKQ9P215 609 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 AK9Q5TCS8 1911 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 ONECUT3O60422 494 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-214ENST00000637038 ZMYND15Q9H091 742 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 SLKQ9H2G2 1235 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-214ENST00000637038 RRP7AQ9Y3A4 280 aaKnown RBP4.97□□□□□ -1.61
SCN1A-214ENST00000637038 RIMS2Q9UQ26 1411 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 SOS2Q07890 1332 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-214ENST00000637038 LMOD3Q0VAK6 560 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 KDM3BQ7LBC6 1761 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 CACNA1FO60840 1977 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 TECPR2O15040 1411 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 PAXIP1Q6ZW49 1069 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-214ENST00000637038 SMC1BQ8NDV3 1235 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 IL27Q8NEV9 243 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 TBC1D32Q96NH3 1257 aa4.97□□□□□ -1.61
SCN1A-214ENST00000637038 A0A1W2PP64 1363 aa4.96□□□□□ -1.61
SCN1A-214ENST00000637038 HSP90AB1P08238 724 aaKnown RBP4.96□□□□□ -1.61
SCN1A-214ENST00000637038 CAPN2P17655 700 aa4.96□□□□□ -1.61
SCN1A-214ENST00000637038 EVA1CP58658 441 aa4.96□□□□□ -1.61
SCN1A-214ENST00000637038 SKOR2Q2VWA4 1001 aaPredicted RBP4.96□□□□□ -1.61
SCN1A-214ENST00000637038 NBPF15Q8N660 670 aa4.96□□□□□ -1.61
SCN1A-214ENST00000637038 C22orf23Q9BZE7 217 aa4.96□□□□□ -1.61
SCN1A-214ENST00000637038 SLC12A5Q9H2X9 1139 aa4.96□□□□□ -1.62
SCN1A-214ENST00000637038 SBNO1A3KN83 1393 aa4.96□□□□□ -1.62
SCN1A-214ENST00000637038 RGPD2P0DJD1 1756 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms