RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 GNAT3A8MTJ3 354 aa21.79■■□□□ 1.08
CLN3-252ENST00000636907 CRBNQ96SW2 442 aa21.79■■□□□ 1.08
CLN3-252ENST00000636907 MAP3K5Q99683 1374 aa21.78■■□□□ 1.08
CLN3-252ENST00000636907 HAP1P54257 671 aaPredicted RBP21.78■■□□□ 1.08
CLN3-252ENST00000636907 BCL2L13Q9BXK5 485 aa21.78■■□□□ 1.08
CLN3-252ENST00000636907 B4GALNT3Q6L9W6 998 aa21.77■■□□□ 1.08
CLN3-252ENST00000636907 PRDM11Q9NQV5 511 aa21.77■■□□□ 1.08
CLN3-252ENST00000636907 LRRC37A3O60309 1634 aa21.77■■□□□ 1.08
CLN3-252ENST00000636907 FAM208AQ9UK61 1670 aaKnown RBP21.77■■□□□ 1.08
CLN3-252ENST00000636907 CHL1O00533 1208 aa21.75■■□□□ 1.07
CLN3-252ENST00000636907 NLRP2Q9NX02 1062 aa21.75■■□□□ 1.07
CLN3-252ENST00000636907 CSB-PGBD3P0DP91 1061 aa21.75■■□□□ 1.07
CLN3-252ENST00000636907 CANXP27824 592 aaKnown RBP21.74■■□□□ 1.07
CLN3-252ENST00000636907 PLEKHO1Q53GL0 409 aaPredicted RBP21.74■■□□□ 1.07
CLN3-252ENST00000636907 SSH1Q8WYL5 1049 aa21.74■■□□□ 1.07
CLN3-252ENST00000636907 FRAT1Q92837 279 aaPredicted RBP21.74■■□□□ 1.07
CLN3-252ENST00000636907 AMOTQ4VCS5 1084 aa21.73■■□□□ 1.07
CLN3-252ENST00000636907 TSPYL6Q8N831 410 aa21.73■■□□□ 1.07
CLN3-252ENST00000636907 IL17REQ8NFR9 667 aa21.72■■□□□ 1.07
CLN3-252ENST00000636907 SMC4Q9NTJ3 1288 aa21.72■■□□□ 1.07
CLN3-252ENST00000636907 VAMP4O75379 141 aa21.72■■□□□ 1.07
CLN3-252ENST00000636907 C8orf58Q8NAV2 365 aa21.72■■□□□ 1.07
CLN3-252ENST00000636907 PDE3AQ14432 1141 aa21.71■■□□□ 1.07
CLN3-252ENST00000636907 ZNF530Q6P9A1 599 aaPredicted RBP21.71■■□□□ 1.07
CLN3-252ENST00000636907 ALDH1L2Q3SY69 923 aa21.7■■□□□ 1.06
CLN3-252ENST00000636907 ZNF428Q96B54 188 aa21.7■■□□□ 1.06
CLN3-252ENST00000636907 CCDC136Q96JN2 1154 aa21.7■■□□□ 1.06
CLN3-252ENST00000636907 MIS18AQ9NYP9 233 aa21.7■■□□□ 1.06
CLN3-252ENST00000636907 COL22A1Q8NFW1 1626 aaPredicted RBP21.7■■□□□ 1.06
CLN3-252ENST00000636907 ELL2O00472 640 aaPredicted RBP21.69■■□□□ 1.06
CLN3-252ENST00000636907 TWISTNBQ3B726 338 aaPredicted RBP21.69■■□□□ 1.06
CLN3-252ENST00000636907 AKAP4Q5JQC9 854 aa21.69■■□□□ 1.06
CLN3-252ENST00000636907 COL5A2P05997 1499 aaPredicted RBP21.69■■□□□ 1.06
CLN3-252ENST00000636907 PHLPP1O60346 1717 aa21.69■■□□□ 1.06
CLN3-252ENST00000636907 TOM1O60784 492 aa21.69■■□□□ 1.06
CLN3-252ENST00000636907 AEBP2Q6ZN18 517 aaPredicted RBP21.69■■□□□ 1.06
CLN3-252ENST00000636907 WDR17Q8IZU2 1322 aa21.68■■□□□ 1.06
CLN3-252ENST00000636907 COL16A1Q07092 1604 aaPredicted RBP21.68■■□□□ 1.06
CLN3-252ENST00000636907 PANK1Q8TE04 598 aa21.68■■□□□ 1.06
CLN3-252ENST00000636907 RAPGEF4Q8WZA2 1011 aa21.68■■□□□ 1.06
CLN3-252ENST00000636907 TSPYL4Q9UJ04 414 aa21.68■■□□□ 1.06
CLN3-252ENST00000636907 TNNQ9UQP3 1299 aa21.68■■□□□ 1.06
CLN3-252ENST00000636907 CEMIPQ8WUJ3 1361 aa21.68■■□□□ 1.06
CLN3-252ENST00000636907 MEGF6O75095 1541 aa21.68■■□□□ 1.06
CLN3-252ENST00000636907 TATP17735 454 aaPredicted RBP21.66■■□□□ 1.06
CLN3-252ENST00000636907 PIP4K2BP78356 416 aa21.66■■□□□ 1.06
CLN3-252ENST00000636907 KRT24Q2M2I5 525 aa21.66■■□□□ 1.06
CLN3-252ENST00000636907 C1orf141Q5JVX7 400 aa21.66■■□□□ 1.06
CLN3-252ENST00000636907 ZKSCAN2Q63HK3 967 aa21.66■■□□□ 1.06
CLN3-252ENST00000636907 LGR6Q9HBX8 967 aa21.66■■□□□ 1.06
CLN3-252ENST00000636907 BRPF1P55201 1214 aaPredicted RBP21.64■■□□□ 1.05
CLN3-252ENST00000636907 TAF7Q15545 349 aaPredicted RBP21.64■■□□□ 1.05
CLN3-252ENST00000636907 MPRIPQ6WCQ1 1025 aa21.64■■□□□ 1.05
CLN3-252ENST00000636907 NOB1Q9ULX3 412 aaKnown RBP21.64■■□□□ 1.05
CLN3-252ENST00000636907 PLEKHG2Q9H7P9 1386 aa21.63■■□□□ 1.05
CLN3-252ENST00000636907 RLBP1P12271 317 aa21.63■■□□□ 1.05
CLN3-252ENST00000636907 TOM1L2Q6ZVM7 507 aa21.63■■□□□ 1.05
CLN3-252ENST00000636907 MRPL50Q8N5N7 158 aaKnown RBP21.63■■□□□ 1.05
CLN3-252ENST00000636907 KIF16BQ96L93 1317 aa21.63■■□□□ 1.05
CLN3-252ENST00000636907 UBAP1LF5GYI3 381 aa21.63■■□□□ 1.05
CLN3-252ENST00000636907 PELP1Q8IZL8 1130 aaKnown RBP21.63■■□□□ 1.05
CLN3-252ENST00000636907 BABAM1Q9NWV8 329 aa21.63■■□□□ 1.05
CLN3-252ENST00000636907 COG6Q9Y2V7 657 aa21.63■■□□□ 1.05
CLN3-252ENST00000636907 RNMTO43148 476 aaKnown RBP21.62■■□□□ 1.05
CLN3-252ENST00000636907 CLUAP1Q96AJ1 413 aa21.62■■□□□ 1.05
CLN3-252ENST00000636907 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.62■■□□□ 1.05
CLN3-252ENST00000636907 VIRMAQ69YN4 1812 aaKnown RBP21.62■■□□□ 1.05
CLN3-252ENST00000636907 OVOS2A0A0G2JMS6 1433 aa21.61■■□□□ 1.05
CLN3-252ENST00000636907 TCERG1O14776 1098 aaKnown RBP21.61■■□□□ 1.05
CLN3-252ENST00000636907 TRIM27P14373 513 aa21.61■■□□□ 1.05
CLN3-252ENST00000636907 ATF7IPQ6VMQ6 1270 aa21.61■■□□□ 1.05
CLN3-252ENST00000636907 PKD1L3Q7Z443 1732 aa21.61■■□□□ 1.05
CLN3-252ENST00000636907 STRN4Q9NRL3 753 aa21.61■■□□□ 1.05
CLN3-252ENST00000636907 SPG7Q9UQ90 795 aa21.61■■□□□ 1.05
CLN3-252ENST00000636907 COL14A1Q05707 1796 aaKnown RBP21.61■■□□□ 1.05
CLN3-252ENST00000636907 DZIP1LQ8IYY4 767 aaKnown RBP21.6■■□□□ 1.05
CLN3-252ENST00000636907 ADAMTS7Q9UKP4 1686 aa21.6■■□□□ 1.05
CLN3-252ENST00000636907 EVA1CP58658 441 aa21.6■■□□□ 1.05
CLN3-252ENST00000636907 LARP1Q6PKG0 1096 aaKnown RBP21.6■■□□□ 1.05
CLN3-252ENST00000636907 CARD10Q9BWT7 1032 aa21.6■■□□□ 1.05
CLN3-252ENST00000636907 IPO8O15397 1037 aaKnown RBP21.59■■□□□ 1.05
CLN3-252ENST00000636907 MS4A1P11836 297 aa21.59■■□□□ 1.05
CLN3-252ENST00000636907 PARP4Q9UKK3 1724 aaKnown RBP21.58■■□□□ 1.05
CLN3-252ENST00000636907 PHKG2P15735 406 aa21.58■■□□□ 1.05
CLN3-252ENST00000636907 TEFQ10587 303 aa21.58■■□□□ 1.05
CLN3-252ENST00000636907 FTSJ3Q8IY81 847 aaKnown RBP21.58■■□□□ 1.05
CLN3-252ENST00000636907 BTG4Q9NY30 223 aa21.58■■□□□ 1.05
CLN3-252ENST00000636907 KDM3BQ7LBC6 1761 aa21.58■■□□□ 1.04
CLN3-252ENST00000636907 IFNL2Q8IZJ0 200 aa21.56■■□□□ 1.04
CLN3-252ENST00000636907 MVPQ14764 893 aaKnown RBP21.55■■□□□ 1.04
CLN3-252ENST00000636907 ARHGAP45Q92619 1136 aa21.55■■□□□ 1.04
CLN3-252ENST00000636907 KDM6AO15550 1401 aaPredicted RBP21.55■■□□□ 1.04
CLN3-252ENST00000636907 SIPA1L3O60292 1781 aaPredicted RBP21.55■■□□□ 1.04
CLN3-252ENST00000636907 SCN11AQ9UI33 1791 aa21.54■■□□□ 1.04
CLN3-252ENST00000636907 CYP27B1O15528 508 aa21.54■■□□□ 1.04
CLN3-252ENST00000636907 BTBD11A6QL63 1104 aa21.53■■□□□ 1.04
CLN3-252ENST00000636907 IL2RBP14784 551 aa21.53■■□□□ 1.04
CLN3-252ENST00000636907 TMEM57Q8N5G2 664 aa21.52■■□□□ 1.04
CLN3-252ENST00000636907 SOS1Q07889 1333 aaPredicted RBP21.51■■□□□ 1.03
CLN3-252ENST00000636907 KCNQ3O43525 872 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms